PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim07g062240.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 214aa MW: 24915.6 Da PI: 9.3475 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.4 | 1.7e-24 | 19 | 139 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 GfrFhPtd el+ +yL + v +++l++ i+e d+y +Pw + + +ek +y F++ +k ++ + r r++ +g Wk++ + k+++ Sopim07g062240.0.1 19 EGFRFHPTDRELM-KYLLHYVIDNPLPTLVPIEEEDLYLKDPWVFF-DA-RKEKTIYCFTELKKLKKGNLRFVRTVGDGSWKSQDRGKAII 106 7************.99*********999788**************6.33.357899********99999********************** PP NAM 94 skkgelvglkktLvfy.kgrapkgektdWvmheyrl 128 s++g++ g k++L + +g+++ +W+m+ey+l Sopim07g062240.0.1 107 SERGSVLGYKRSLRYQlRGSEH---DGQWLMKEYSL 139 ***************8344444...579******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-29 | 10 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.085 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-15 | 19 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAQTMTYKPE CISYSAYTEG FRFHPTDREL MKYLLHYVID NPLPTLVPIE EEDLYLKDPW 60 VFFDARKEKT IYCFTELKKL KKGNLRFVRT VGDGSWKSQD RGKAIISERG SVLGYKRSLR 120 YQLRGSEHDG QWLMKEYSLS AEVKNQLRKQ LRENNKENYV LCRVKRKNGE YRKNEKDGPT 180 VQNEAIETEE LNAIISDPLN GVLKPVPTLN LAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-14 | 20 | 173 | 18 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244376.3 | 1e-158 | NAC domain-containing protein 83-like | ||||
TrEMBL | M1AA79 | 1e-111 | M1AA79_SOLTU; Uncharacterized protein | ||||
STRING | Solyc07g062240.1.1 | 1e-158 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 7e-18 | NAC domain containing protein 32 |