PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim07g055100.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 430aa MW: 48037.2 Da PI: 10.3089

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim07g055100.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.4	2.2e-14	100	190	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ +++Liea ++ +l+rg+l+ ++Weev++++ + ++ r+ +qCk++++ l+k+yk +++ ++ + s +p+f++l+ Sopim07g055100.0.1 100 CWSEAATHTLIEAWGSRYLELNRGNLRHQHWEEVADAVnaqhgHIKKQYRTDIQCKNRIDTLKKKYKIERAKVSQSPGRYISAWPFFSSLN 190 7***********************************96655444456899***************99999889999***9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.7E-25	98	190	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MFRRHNHTDN PSLITSSNPN SSTIFHPSAA DAAVVSHSGT MSDDDHLAPP FSNHNSPSPS 60 HSRSPLPGRD NKLLALPPPP MLTPASMSAR TPVFPAREDC WSEAATHTLI EAWGSRYLEL 120 NRGNLRHQHW EEVADAVNAQ HGHIKKQYRT DIQCKNRIDT LKKKYKIERA KVSQSPGRYI 180 SAWPFFSSLN VLIGVTAKAS PPPPATTLPP QRRMPPTQAT SPPQWRAPPP EMSPLQWRSP 240 PPEMLPFQWR TPPVPPPPLL GIPVGPRSKR PAAAIDYKVS RRNFSAMAAA AAAASDDSDE 300 EKEESETSSV AASAMAIATC RIKRKKSGGL VEGYKMLAES IGKFSEIYER VEMAKQRQMI 360 ELEKQRMQFA KDLEIQRMKL IMESQVHLEK LKRSKTQLRR WFGGMLCNLM RGSLCKPYTC 420 IYILISVFI*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MFRRHNHTDN PSLITSSNPN SSTIFHPSAA DAAVVSHSGT MSDDDHLAPP FSNHNSPSPS  60
HSRSPLPGRD NKLLALPPPP MLTPASMSAR TPVFPAREDC WSEAATHTLI EAWGSRYLEL  120
NRGNLRHQHW EEVADAVNAQ HGHIKKQYRT DIQCKNRIDT LKKKYKIERA KVSQSPGRYI  180
SAWPFFSSLN VLIGVTAKAS PPPPATTLPP QRRMPPTQAT SPPQWRAPPP EMSPLQWRSP  240
PPEMLPFQWR TPPVPPPPLL GIPVGPRSKR PAAAIDYKVS RRNFSAMAAA AAAASDDSDE  300
EKEESETSSV AASAMAIATC RIKRKKSGGL VEGYKMLAES IGKFSEIYER VEMAKQRQMI  360
ELEKQRMQFA KDLEIQRMKL IMESQVHLEK LKRSKTQLRR WFGGMLCNLM RGSLCKPYTC  420
IYILISVFI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004243285.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	M1BTN6	0.0	M1BTN6_SOLTU; Uncharacterized protein
STRING	Solyc07g055100.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	4e-42	sequence-specific DNA binding transcription factors