PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g055000.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 243aa    MW: 27926 Da    PI: 6.3975
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g055000.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++l+ +++++G+ +W+  +++ g+ R++k+c++rw ++l
  Sopim07g055000.0.1 14 KGSWTLEEDKKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWINHL 61
                        799******************************************996 PP
2Myb_DNA-binding45.32e-1471110647
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         t Ede++++ ++qlG++ W+tIa++++  R+++++k++w++ 
  Sopim07g055000.0.1  71 TKEDEIILNIHAQLGNK-WSTIAAHLP-ERSDNEIKNYWHTT 110
                         57***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-21664IPR009057Homeodomain-like
PROSITE profilePS5129420.131965IPR017930Myb domain
SuperFamilySSF466892.68E-2611107IPR009057Homeodomain-like
SMARTSM007171.1E-91363IPR001005SANT/Myb domain
PfamPF002494.1E-131461IPR001005SANT/Myb domain
CDDcd001676.12E-81661No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2165114IPR009057Homeodomain-like
PROSITE profilePS5129415.36866115IPR017930Myb domain
SMARTSM007171.3E-1066113IPR001005SANT/Myb domain
PfamPF002497.8E-1272110IPR001005SANT/Myb domain
CDDcd001676.31E-873111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVRTTCYDEN GRKKGSWTLE EDKKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWINH  60
LRPNVKRGNY TKEDEIILNI HAQLGNKWST IAAHLPERSD NEIKNYWHTT LKKRAANTTN  120
KNSIESNTRR NITSVENQNA SANNNNNNNM HENIVLESSE WSPNESSSEA LSSIDYQQDI  180
FQEELANLEE ITSGSFWTQP FEVDTKIDFV APSIDYCGLV CPPSPFMPHE FLSSFDLDHY  240
NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141157108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323706.10.0transcription factor MYB58-like
TrEMBLA0A3Q7HFX71e-180A0A3Q7HFX7_SOLLC; Uncharacterized protein
STRINGSolyc07g055000.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-50myb domain protein 9