PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g054980.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 468aa    MW: 52170.6 Da    PI: 10.1024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g054980.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd++l  +++++G  +W+  +++ g+ R++k+c++rw ++l
  Sopim07g054980.0.1 14 KGTWTPEEDKKLEAYITKYGCWNWRQLPKYAGLARCGKSCRLRWMNHL 61
                        799*****************99************************96 PP

2Myb_DNA-binding57.92.4e-1867110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eEdel++++++qlG++ W++Ia +++ gR+++++k++w++
  Sopim07g054980.0.1  67 RGNYTKEEDELILNLHAQLGNR-WSAIAIHLP-GRSDNEIKNHWHT 110
                         899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.023961IPR017930Myb domain
SuperFamilySSF466896.47E-2911108IPR009057Homeodomain-like
SMARTSM007175.3E-101363IPR001005SANT/Myb domain
PfamPF002494.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221568IPR009057Homeodomain-like
CDDcd001675.15E-101661No hitNo description
PROSITE profilePS5129426.34762116IPR017930Myb domain
SMARTSM007171.0E-1766114IPR001005SANT/Myb domain
PfamPF002492.5E-1667110IPR001005SANT/Myb domain
CDDcd001673.58E-1369112No hitNo description
Gene3DG3DSA:1.10.10.608.6E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MVRTPGYDKN GRKKGTWTPE EDKKLEAYIT KYGCWNWRQL PKYAGLARCG KSCRLRWMNH  60
LRPNVKRGNY TKEEDELILN LHAQLGNRWS AIAIHLPGRS DNEIKNHWHT SLKKRANYNS  120
SEGSKKCNNK NSGSNTKRKS SVENRNAISA NNNSNMHENI VLESSDWSPK ESSSEELSSY  180
QHEQHKVVQQ ELALEEISSG NFWTEPFEVD SFINRKIDFV APSIDYYGLM CPPSPYIALC  240
SEAHYPTLPP RPRSAVLRGP LPYPTPPTTL PPGPRSATLR GPLPYPTLPY PPDLGAPCSE  300
AHYPTPRTSE RHAPRPPTPP HYPTPRTSER RAPRPPTLPH YSTPRTSEHR APRPPAHPPT  360
TPYRPDLGAP RSEAPYPPAH YPLPPGPRSA ALRGPLPPVH YPLPPGPLSA ALRGPLPPAH  420
YPPDLGASRS EAPYPPPTTP LPPGPRSAAL RGPLPPGPSE RRAPRPRX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141177109B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070294.11e-179transcription factor MYB14-like
TrEMBLA0A3Q7I9M11e-177A0A3Q7I9M1_SOLLC; Uncharacterized protein
STRINGSolyc07g054980.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-49myb domain protein 15