PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g052960.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 430aa    MW: 48611.2 Da    PI: 5.2807
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g052960.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.37e-94374161373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsP 89 
                         l++lLl+cA a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r    +y   +  + s++ + + +++++l  ++++ P
  Sopim07g052960.0.1  37 LEKLLLHCASALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASR----VYPNATNLHGSSNLERRLMSVTELagYVDLIP 123
                         5799***************************************************....55444444444333455555555577****** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
                         +++f++ + N+ I++a+e++++vHi+Df+i++++QWp+L++a+a+RpegppslRi + +   ++    + + ee+g+rLa+fA+  +vpfe
  Sopim07g052960.0.1 124 WHRFGFCASNSVIYKAIERQTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPQVpplLNVSSEEVGQRLANFAKFRDVPFE 214
                         ********************************************************988755558899999******************** PP

                GRAS 178 fnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadh.nsesFlerfleal 261
                         f+v+    +   l++l++++L+++ +Eal+Vn++  l +l+d+++       rd +L+ vk+l+P +v++v++++d+ n +++  r++ ++
  Sopim07g052960.0.1 215 FHVIedlnYDMFLSQLNPSTLQIRDDEALVVNCQNWLRYLHDDEQIKGAlsSRDIFLDRVKDLNPCIVTIVDEDCDLgNPTTLTSRIATCF 305
                         ***9766444467889*******************99999876543333457*************************9999********** PP

                GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
                         +y +  fd+le+ lp++s++r  +E+e +g +i+n++  eg++r+er e+ +k ++r+e++G+ +vp+se++ k++k+ll +++ ++g++ 
  Sopim07g052960.0.1 306 NYLWIPFDALETFLPKDSKQRLDYEAE-IGHKIENIIGFEGNQRIERLESCNKFSQRMENSGYMSVPFSEETIKEVKSLLDEHAsGWGMK- 394
                         ***************************.********************************************************666555. PP

                GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                         +ee++ lvl+Wk+++ v +++W
  Sopim07g052960.0.1 395 KEEHDMLVLTWKGHNSVYATSW 416
                         45677899******99999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.70311397IPR005202Transcription factor GRAS
PfamPF035142.4E-9137416IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MNSTTIPLQN PSFFNNSQSS LAGALQGCIG SLDGACLEKL LLHCASALEN NDVTLAQQVM  60
WVLNNLASSN GDPNQRLTSW FLRALISRAS RVYPNATNLH GSSNLERRLM SVTELAGYVD  120
LIPWHRFGFC ASNSVIYKAI ERQTKVHILD FSITHCMQWP TLIDAIAKRP EGPPSLRISV  180
PSWRPQVPPL LNVSSEEVGQ RLANFAKFRD VPFEFHVIED LNYDMFLSQL NPSTLQIRDD  240
EALVVNCQNW LRYLHDDEQI KGALSSRDIF LDRVKDLNPC IVTIVDEDCD LGNPTTLTSR  300
IATCFNYLWI PFDALETFLP KDSKQRLDYE AEIGHKIENI IGFEGNQRIE RLESCNKFSQ  360
RMENSGYMSV PFSEETIKEV KSLLDEHASG WGMKKEEHDM LVLTWKGHNS VYATSWVIVS  420
PPHMDMSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-573841688472Protein SHORT-ROOT
5b3h_B2e-573841634418Protein SHORT-ROOT
5b3h_E2e-573841634418Protein SHORT-ROOT
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243434.10.0scarecrow-like protein 32
TrEMBLA0A3Q7HE770.0A0A3Q7HE77_SOLLC; Uncharacterized protein
STRINGSolyc07g052960.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-121GRAS family protein