PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g052830.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 321aa    MW: 35768 Da    PI: 4.848
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g052830.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57382.27.8e-26147221478
              DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkep 78 
                         + lws++D+++lL+G++++k+ +g++p +d++af+ef+k++++++vsksql+eK++rLKkKf ++ ++++++ e 
  Sopim07g052830.0.1 147 RFLWSDDDQLALLKGIVEYKEVEGMEPNADMSAFHEFIKGKLQVEVSKSQLSEKLKRLKKKFLTNDDEKHKEVEE 221
                         569***********************************************************9998873333332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-19149216IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MALKIKSRLV DQPPSASSSE DQELVEESHE EEQQQSGEGE GEEESGEETE EPKTAHPVVK  60
RFLTQKLQLS SESGSENGSG SESEAESGHS LPSPSASDFT IKPSVPAKAA APSKSVAKRP  120
QKAQKEKGRK KPKIAEEEEK KSAATPRFLW SDDDQLALLK GIVEYKEVEG MEPNADMSAF  180
HEFIKGKLQV EVSKSQLSEK LKRLKKKFLT NDDEKHKEVE EQVAVKEVVR EDIVKDDHQD  240
FQSEYPRLAA SFESMAGMST MYPNGSSFLK EKLSLIATDK AKELEEKWKK LEDDEAALMV  300
KRLDFIAEHY KLVVDAMRGN *
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535910.0AC253591.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone hba-13d24 map 7, complete sequence.
GenBankAC2536110.0AC253611.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence.
GenBankBT0136800.0BT013680.1 Lycopersicon esculentum clone 132502R, mRNA sequence.
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170368.11e-135PREDICTED: neurofilament heavy polypeptide-like isoform X1
RefseqXP_015170369.11e-137PREDICTED: neurofilament heavy polypeptide-like isoform X2
SwissprotQ94IK24e-70STK_SOLTU; STOREKEEPER protein
TrEMBLA0A3Q7I8D95e-93A0A3Q7I8D9_SOLLC; Uncharacterized protein
STRINGSolyc07g052830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.19e-15DNA-binding storekeeper protein-related transcriptional regulator