PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g052760.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 383aa    MW: 42923.4 Da    PI: 6.8249
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g052760.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.21.8e-31140231397
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                         +++lws++D+++lL+G+ ++k+ +g++p +d++af+ef++++++++vsksql+eKi+rLKkKf ++ k    ++ep+f k +d  +f++sk
  Sopim07g052760.0.1 140 PRSLWSDDDQLALLKGIAEYKTVKGMEPNADMTAFHEFIRGKLQVEVSKSQLSEKIKRLKKKFFTNAKG---DEEPVFMKGQDFLVFQHSK 227
                         6789*************************************************************9998...9****************** PP

              DUF573  94 kiWg 97 
                         +iWg
  Sopim07g052760.0.1 228 RIWG 231
                         ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.8E-25142231IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAPKTKSRLV DQPPSASSSE EQELVEECQE EEEQQQQSRE ETEEEEEPPV VKRSITQKPV  60
KTAQKLQFSS ESDSENGSGS ESKKSDHSPP SPFVSDFTIK PIVSAPSKSA GKRPQEAQKE  120
KGRKKPKIAE EEDKKSAATP RSLWSDDDQL ALLKGIAEYK TVKGMEPNAD MTAFHEFIRG  180
KLQVEVSKSQ LSEKIKRLKK KFFTNAKGDE EPVFMKGQDF LVFQHSKRIW GAPGTSSGVK  240
EIVTNSTNGK AKKTVEAKKS SEPKKSGKVS KHKDDEEHKE EEKQVAVKEV VKEDIVKGDQ  300
QDFQSEYPRL AASFESMSGM FTIYPNGTSF LKEKMSLIAP DKAKVLEEKW KKLEDDEAAL  360
MVKRLDLIAE HYRLVVDAMR GN*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536110.0AC253611.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence.
GenBankBT0141650.0BT014165.1 Lycopersicon esculentum clone 133289F, mRNA sequence.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243442.10.0STOREKEEPER protein
SwissprotQ94IK21e-177STK_SOLTU; STOREKEEPER protein
TrEMBLM1CH600.0M1CH60_SOLTU; Uncharacterized protein
STRINGSolyc07g052760.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-22DNA-binding storekeeper protein-related transcriptional regulator