PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g052300.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 487aa    MW: 53797.6 Da    PI: 5.9794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g052300.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-162067148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed +l d+vk++G g+W+++ r  g+ R++k+c++rw ++l
  Sopim07g052300.0.1 20 KGPWTAGEDAILMDYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 67
                        79******************************************9986 PP
2Myb_DNA-binding52.79.5e-1773116146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T+eE+ +++d++++lG++ W++ a+ ++ gRt++++k++w++
  Sopim07g052300.0.1  73 KGAFTPEEERIIIDLHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 116
                         799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5321567IPR017930Myb domain
SuperFamilySSF466897.49E-3018114IPR009057Homeodomain-like
SMARTSM007173.7E-121969IPR001005SANT/Myb domain
PfamPF002497.1E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-232174IPR009057Homeodomain-like
CDDcd001673.47E-102267No hitNo description
PROSITE profilePS5129426.20468122IPR017930Myb domain
SMARTSM007171.7E-1672120IPR001005SANT/Myb domain
PfamPF002492.4E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2575121IPR009057Homeodomain-like
CDDcd001675.29E-1275118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAPDDRGTRN GGGTRQALKK GPWTAGEDAI LMDYVKKHGE GNWNAVQRNS GLMRCGKSCR  60
LRWANHLRPH LKKGAFTPEE ERIIIDLHAK LGNKWARMAA QLPGRTDNEI KNYWNTRLKR  120
RQRAGLPIYP QELQSQNQQE NNQPQSLISS PFDPQRATYN NPPPLSLLNV FNPSTMRPSI  180
THQFPLSSNA IFRDPPKGLP LTLPSTLRNS PLFSGSASMP NNNFGPTLSN LMPVSSFQQN  240
YPNFSFTTRP FMGIPSNQNE LMSGMGLSSI NYPSGPSVMT ASSCSDFGSS DANNYAHVEL  300
SQGNSGLLED LLKGTQNFPR STNIEENNSL DLNGKGKSLW QDYGLVGEEA RDHQDEAFLT  360
EESVYSFAHG GDVNLNNSSE SSSTDPNASS GIFLRKEGSL QGINQVDEHI MSLLNNFPLD  420
QEPVPNWYDE TDDKKMNSEI GADDHKAESL GEDSSKSQVA ITTTSGLKQH DWELGGCCWN  480
NMPPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30181215107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243474.10.0transcription factor MYB101
TrEMBLA0A3Q7HBJ40.0A0A3Q7HBJ4_SOLLC; Uncharacterized protein
STRINGSolyc07g052300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.21e-69myb domain protein 101