PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g047950.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 546aa    MW: 60777 Da    PI: 6.4546
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g047950.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.84.3e-1381755451374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+++L++cA+avs+g+l  aq l+++l++++s +g+p+qRl ay++e+L arl  s+s+++k+l+++e +   s e l+++++++e++P++
  Sopim07g047950.0.1 175 LKQVLIACAKAVSDGELVTAQVLISELRQMVSVSGEPIQRLGAYILEGLVARLGASGSSICKSLRCKEPA---SFELLSYMHVLYEICPYF 262
                         5799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ e+rvHiiDf+i qG QW++++qa+a+Rp+gpp++RiTg+++++s   +   l  +g+rL+k+A++++vpfef++
  Sopim07g047950.0.1 263 KFGYMSANGAIAEAMKDENRVHIIDFQIAQGSQWVPMIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLDIVGQRLSKLAKTFKVPFEFHP 353
                         **********************************************************998899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a + +d++l++L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+l+Pkvv++veqe+++n++ F+ rfle+l+yysa+f+s+
  Sopim07g047950.0.1 354 -AAMSGSDIQLKNLGIQPGEALAVNFAFTLHHMPDESVSTENHRDRLLRMVKNLNPKVVTLVEQESNTNTAAFFPRFLETLDYYSAMFESI 443
                         .899*************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpr ++eri+vE+++l+r++vn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+ +++  yr+ee++g+l+lgW
  Sopim07g047950.0.1 444 DMTLPRGHKERINVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFNPYPLSSLVNATIKTLLESYSD-KYRLEERDGALYLGW 533
                         **************************************************************************5.5************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r Lv+ +aW+
  Sopim07g047950.0.1 534 MNRDLVASCAWK 545
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.139149526IPR005202Transcription factor GRAS
PfamPF035141.5E-135175545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQASRRRRTT MSNMLYCEPV QKAEAYYLPQ FQTLESHLSC INGSLGGNHS FQTYHDRYCM  60
LEASSATGSN AVYHSPSTAS FSSNGSTTCN QESQLYLSDV RQSPETTNYG SPISGSCITD  120
DVTDFMHKLK ELETAMLGPD ADFQESYDNS LASSIASSEI DSWRQMMLAI PRRDLKQVLI  180
ACAKAVSDGE LVTAQVLISE LRQMVSVSGE PIQRLGAYIL EGLVARLGAS GSSICKSLRC  240
KEPASFELLS YMHVLYEICP YFKFGYMSAN GAIAEAMKDE NRVHIIDFQI AQGSQWVPMI  300
QAFAARPGGP PHIRITGIDD STSAYARGGG LDIVGQRLSK LAKTFKVPFE FHPAAMSGSD  360
IQLKNLGIQP GEALAVNFAF TLHHMPDESV STENHRDRLL RMVKNLNPKV VTLVEQESNT  420
NTAAFFPRFL ETLDYYSAMF ESIDMTLPRG HKERINVEQH CLARDVVNII ACEGIERVER  480
HELLGKWKSR FRMAGFNPYP LSSLVNATIK TLLESYSDKY RLEERDGALY LGWMNRDLVA  540
SCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-611775456375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243547.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A3Q7HA700.0A0A3Q7HA70_SOLLC; Uncharacterized protein
STRINGSolyc07g047950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]