PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim07g045000.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 177aa MW: 19954.8 Da PI: 5.5191

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim07g045000.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	26.6	1.4e-08	1	19	36	54
G2-like 36 mkvkgLtlehvkSHLQkYR 54 m vkgL ++hvkSHLQ+YR Sopim07g045000.0.1 1 MAVKGLKISHVKSHLQMYR 19 89***************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-7	1	21	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAVKGLKISH VKSHLQMYRN LKERGNLNMV RSVNNFHEET PQFSWSSPQH VCEALLEHGP 60 SKSSKQIDPG SDKLPNYKAI INAYIAENNI YCYDYQEAQG SLSSGMTKEE EDDDGGGGGG 120 PSSEIYEFSH EREINFWPLN DYNHQNSQYD SSKKQVLNST KDNSHINLDL SISSYF*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	1e-134	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010323925.1	1e-129	uncharacterized protein LOC101246548 isoform X2
TrEMBL	A0A3Q7HA81	1e-127	A0A3Q7HA81_SOLLC; Uncharacterized protein
STRING	Solyc07g045000.2.1	1e-129	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25