PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim07g043620.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 526aa MW: 58584.9 Da PI: 8.059 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.3e-23 | 130 | 231 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++g++W++++i+r++++r++l +GW+ Fv+a++L +gD v+F Sopim07g043620.0.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKLRHIFRGQPNRHLLITGWSVFVSAKRLVAGDAVIFI-- 217 99*****************************97677775.9************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ Sopim07g043620.0.1 218 WNENNQLLLGIRRA 231 7888889****997 PP | |||||||
2 | Auxin_resp | 115.4 | 4.9e-38 | 256 | 339 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t++ F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++g+sdldpv WpnS+Wrs+k Sopim07g043620.0.1 256 AAHATATNTRFTIFYNPRASPSEFVIPLAKYAKAVChTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVCWPNSHWRSVK 339 79********************************97689******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-48 | 115 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-41 | 123 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.98E-23 | 129 | 230 | No hit | No description |
Pfam | PF02362 | 3.0E-21 | 130 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-24 | 130 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.971 | 130 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.6E-33 | 256 | 339 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 526 aa Download sequence Send to blast |
MRVSSSGFNP QPEEAAGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSVQVAASTN 60 KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT LQPLSPQEQK DVCLLPAELG 120 IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW 180 KLRHIFRGQP NRHLLITGWS VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTLMPS 240 SVLSSDSMHI GLLAAAAHAT ATNTRFTIFY NPRASPSEFV IPLAKYAKAV CHTRISVGMR 300 FRMLFETEES SVRRYMGTIT GISDLDPVCW PNSHWRSVKV GWDESTAGER QPRVSLWEIE 360 PLTTFPMYPS PFSLRLKRPW PSGLPSLPGF PNVGLTMNSP LSWLRGDMGD QGMQSLNFQG 420 FGATPFMQPR MDASMLGLQP DILQTMTALD PSKLANQSLM QFQHSIPNSS APLSQIQMLQ 480 PSHSQHNLIQ GFSENHLISQ AQMLQQQLQR RQNFNDQQQL LQPQL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 13 | 360 | 42 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM187579 | 0.0 | HM187579.1 Solanum lycopersicum auxin response factor 6-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015082267.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A3Q7H9Z3 | 0.0 | A0A3Q7H9Z3_SOLLC; Auxin response factor | ||||
STRING | Solyc07g043620.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2368 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |