PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g043330.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 433aa    MW: 47951.5 Da    PI: 5.0079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g043330.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.81.5e-112714293374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          lLl+cAe+v+ ++l +a  lL ++ el+sp g++ +R+aayf+e L+ar+ +s  + y+ l+ ++ + ++s++ ++al+ ++ +sP++kf
  Sopim07g043330.0.1  71 GLLLQCAEFVAMENLDEAADLLPEIAELSSPFGSSAERVAAYFAESLSARIISSHLRFYSPLNLKSLTLTHSQKLFTALQSYNTISPLIKF 161
                         58***************************************************************************************** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         sh taNqaI++a+ege++vH+iD+di+qGlQWp L+q L+sR+++  s+RiTgvgs    s e le+tg+rL++fA+++g+pfef+++  k
  Sopim07g043330.0.1 162 SHYTANQAIYQALEGEDHVHVIDLDIMQGLQWPGLFQILSSRSRKLRSIRITGVGS----SMELLESTGRRLTEFANSFGLPFEFQPFEGK 248
                         ********************************************************....***************************9888 PP

                GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                           +  +l++L vk gE+++Vn+++  h l++ ++s       + +l+  l+Pk++++veq+++h +++Fl rf+eal+yysalfd+l  +l
  Sopim07g043330.0.1 249 IGHITDLNQLGVKIGETTVVNWMH--HCLYNITGSDLG----TFRLLTLLRPKLITLVEQDLSH-GGNFLSRFVEALHYYSALFDALGDGL 332
                         88999******************9..566655666666....999*******************.789*********************** PP

                GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                         ++es er+ vE++l+g ei+n+va  g +r+ +   +e+W + l++ GF pv+ls + a+qa+lll +++ +gy++ ee+g+l lgWkd +
  Sopim07g043330.0.1 333 SEESAERHRVEQQLFGSEIRNIVAVGGPKRTGEVP-VERWGDELKRIGFLPVSLSGTPAAQASLLLGMFP-RGYTLVEENGCLKLGWKDLS 421
                         *****************************887765.9*********************************.******************** PP

                GRAS 367 LvsvSaWr 374
                         L+++SaW+
  Sopim07g043330.0.1 422 LLTASAWQ 429
                         *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.09243410IPR005202Transcription factor GRAS
PfamPF035145.1E-11071429IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLFVSAIPIN HTSSYSSSMS SKRSISEFTP VSDEPQLLTK RPRNERGEEE EEEGEELLLV  60
DADSIGLRLL GLLLQCAEFV AMENLDEAAD LLPEIAELSS PFGSSAERVA AYFAESLSAR  120
IISSHLRFYS PLNLKSLTLT HSQKLFTALQ SYNTISPLIK FSHYTANQAI YQALEGEDHV  180
HVIDLDIMQG LQWPGLFQIL SSRSRKLRSI RITGVGSSME LLESTGRRLT EFANSFGLPF  240
EFQPFEGKIG HITDLNQLGV KIGETTVVNW MHHCLYNITG SDLGTFRLLT LLRPKLITLV  300
EQDLSHGGNF LSRFVEALHY YSALFDALGD GLSEESAERH RVEQQLFGSE IRNIVAVGGP  360
KRTGEVPVER WGDELKRIGF LPVSLSGTPA AQASLLLGMF PRGYTLVEEN GCLKLGWKDL  420
SLLTASAWQP CD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-153554305380Protein SCARECROW
5b3h_A1e-153554304379Protein SCARECROW
5b3h_D1e-153554304379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243643.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-170SCL23_ARATH; Scarecrow-like protein 23
TrEMBLM1AUK90.0M1AUK9_SOLTU; Uncharacterized protein
STRINGSolyc07g043330.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-149GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]