PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g042230.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 168aa    MW: 18769.2 Da    PI: 8.485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g042230.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-201665255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr +k +g+WvAe+r p++   r r++lg+++taeeAa+a++aa  +l+g
  Sopim07g042230.0.1 16 RYKGVRMRK-WGKWVAEVRQPKS---RDRIWLGSYDTAEEAARAYDAAVVCLRG 65
                        69*****99.*******999854...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.09E-301675No hitNo description
PfamPF008471.5E-131665IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-221674IPR016177DNA-binding domain
PROSITE profilePS5103223.3931673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-311674IPR001471AP2/ERF domain
SMARTSM003801.4E-341679IPR001471AP2/ERF domain
PRINTSPR003673.1E-101728IPR001471AP2/ERF domain
PRINTSPR003673.1E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MVRAKVKKEK KVKGDRYKGV RMRKWGKWVA EVRQPKSRDR IWLGSYDTAE EAARAYDAAV  60
VCLRGPSAMI NFPDDPPLIS CDADNYKLSP SEIQVKASRH ARSSSTRVSE ELAAAAATVV  120
VDHHHSRSAA VESVFFRDDL EFGCSSLDHG EVVLHDDLFD SARMWSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1816811480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243693.11e-120ethylene-responsive transcription factor ERF018-like
TrEMBLA0A3Q7HBU81e-118A0A3Q7HBU8_SOLLC; Uncharacterized protein
STRINGSolyc07g042230.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-25ERF family protein