PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim07g026570.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HB-other | ||||||||
Protein Properties | Length: 142aa MW: 16757.9 Da PI: 7.7745 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48 | 2.1e-15 | 24 | 74 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ e +++Lee+Fe+++ ps+++ +L +k+gL+ +q+ WFqN+R + k Sopim07g026570.0.1 24 KYDVEKTQQLEEFFEECQRPSEDQQNQLGRKVGLDSKQIMAWFQNKRSQTK 74 577899*****************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-15 | 8 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-14 | 12 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.528 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-8 | 16 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.99E-8 | 23 | 74 | No hit | No description |
Pfam | PF00046 | 8.2E-13 | 24 | 74 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MIDSGKKQVG ESSTTPKRQR HCHKYDVEKT QQLEEFFEEC QRPSEDQQNQ LGRKVGLDSK 60 QIMAWFQNKR SQTKAKDDKL DNYTLRKENE FFRCEIMAMK EKKKNNMCPQ CDGPSIGEEE 120 RMCNLENLKT ESQRMREEVN L* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC253668 | 1e-108 | AC253668.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-48p11 map 7, complete sequence. | |||
GenBank | HG975519 | 1e-108 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025887726.1 | 9e-92 | homeobox-leucine zipper protein HDG11-like | ||||
TrEMBL | A0A3Q7HA64 | 2e-94 | A0A3Q7HA64_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g026570.1.1 | 3e-99 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18594 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 2e-30 | homeodomain GLABROUS 11 |