PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g008010.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 212aa    MW: 24522.1 Da    PI: 9.4802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g008010.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-181259148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W +eEd++l+++v+ +G g+W+tI+++ g+ R++k+c++rw +yl
  Sopim07g008010.0.1 12 RGFWKPEEDLILKNCVETHGEGNWATISEKSGLMRSGKSCRLRWKNYL 59
                        799*******************************************97 PP
2Myb_DNA-binding49.97.5e-1665110148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Sopim07g008010.0.1  65 RGMMSEDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNFWNTHL 110
                         6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.716163IPR017930Myb domain
SuperFamilySSF466897.03E-299106IPR009057Homeodomain-like
SMARTSM007172.1E-141161IPR001005SANT/Myb domain
PfamPF002492.5E-151259IPR001005SANT/Myb domain
CDDcd001675.71E-111559No hitNo description
Gene3DG3DSA:1.10.10.601.1E-211566IPR009057Homeodomain-like
SMARTSM007179.3E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129418.58664114IPR017930Myb domain
PfamPF002492.1E-1465110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2267113IPR009057Homeodomain-like
CDDcd001672.34E-1068110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKDKDVKTRM KRGFWKPEED LILKNCVETH GEGNWATISE KSGLMRSGKS CRLRWKNYLR  60
PNIKRGMMSE DEKDLIIRLH KLLGNRWSLI AGRLPGRTDN EVKNFWNTHL NNKRSCRGKK  120
KHVKSKEANT QSTQGKMQEY PAETVSNQEV ATKTALDSWI EEMQDLLSPP TMNNMPFLED  180
EPFIPILDDI VLLEAFTSTG KETWNEIQPF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-22121137107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1220540.0AF122054.1 Solanum tuberosum clone 9 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242766.11e-156transcription factor MYB82
SwissprotQ9LTF72e-60MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A3Q7H7Q81e-155A0A3Q7H7Q8_SOLLC; Uncharacterized protein
STRINGSolyc07g008010.2.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-62myb domain protein 82