PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g083900.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 256aa    MW: 29491.7 Da    PI: 4.9637
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g083900.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27.1e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd ll++++k+ G ++W++ ++  g+ R++k+c++rw +yl
  Sopim06g083900.0.1 14 RGPWSKEEDYLLINYIKKNGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding43.66.6e-1467110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T +E++ ++++++ lG+  W++Ia++++ gRt++++k+ w++
  Sopim06g083900.0.1  67 RGNFTHQEEDTIIKLHQVLGNS-WSAIAARLP-GRTDNEIKNIWHT 110
                         89******************99.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129414.745961IPR017930Myb domain
SuperFamilySSF466894.12E-2911108IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002496.4E-151461IPR001005SANT/Myb domain
CDDcd001673.43E-91661No hitNo description
PROSITE profilePS5129422.93462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2465115IPR009057Homeodomain-like
SMARTSM007176.0E-1266114IPR001005SANT/Myb domain
PfamPF002497.0E-1367110IPR001005SANT/Myb domain
CDDcd001675.51E-769112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRSPCCEKL GLKRGPWSKE EDYLLINYIK KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF THQEEDTIIK LHQVLGNSWS AIAARLPGRT DNEIKNIWHT RLKKKRNESQ  120
LKETQSEPEN TNVDVHLEEA NNSNDKHSEI SNLKINIEIQ QQPSPSSSVS SSSEDSCSNT  180
TATSSESRNQ IMSDNLLEID DDIWSEVVWA QVDDNYVDLS LMEDNYHINS SFDDNWFWDD  240
LFTRSNELML ELPEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121155107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242359.10.0transcription factor MYB13-like
SwissprotQ9LNC96e-73MYB13_ARATH; Transcription factor MYB13
TrEMBLA0A3Q7H5K60.0A0A3Q7H5K6_SOLLC; Uncharacterized protein
STRINGSolyc06g083900.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-72myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]