PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g076290.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 126aa MW: 14029.3 Da PI: 10.0068 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 28.9 | 1.4e-09 | 8 | 61 | 67 | 120 |
GRAS 67 setseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis 120 ++++ + ++ l+a+++++ +sP +s+++aN+ I + +++ +HiiDf+i Sopim06g076290.0.1 8 FAKRRISAADILKAFQVYVTASPSRMMSNIIANKSIGMLTREATSIHIIDFGIL 61 44445558999*****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 8.723 | 1 | 125 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.7E-7 | 8 | 61 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MESLIRSFAK RRISAADILK AFQVYVTASP SRMMSNIIAN KSIGMLTREA TSIHIIDFGI 60 LITGIDFPQA GFRPAERVEE TGRRLVYENS PRDDVLRLIK QIKPDVFLHG IVNGAYNSNF 120 LCNSI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 3e-62 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016576235.1 | 4e-44 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 14 | ||||
Swissprot | Q9SNB8 | 2e-24 | SCL30_ARATH; Scarecrow-like protein 30 | ||||
TrEMBL | A0A2G2WND4 | 1e-44 | A0A2G2WND4_CAPBA; Scarecrow-like protein 11 | ||||
TrEMBL | A0A2G3CBK2 | 4e-45 | A0A2G3CBK2_CAPCH; Scarecrow-like protein 30 | ||||
STRING | Solyc06g076290.1.1 | 6e-86 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA28432 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46600.2 | 6e-27 | GRAS family protein |
Publications ? help Back to Top | |||
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