PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g076030.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 335aa MW: 36053.4 Da PI: 9.282 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.6 | 2.7e-38 | 69 | 128 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCdstntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ Sopim06g076030.0.1 69 EAGLKCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 128 6779*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-36 | 52 | 121 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.9E-32 | 71 | 126 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.581 | 72 | 126 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 74 | 110 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MVFSSFPVYL DHPNLHQLQQ ADGHQQGNTG LELPTVQPPP PMQVGASPGS IRPGSMVDRA 60 RLAKIPLPEA GLKCPRCDST NTKFCYFNNY NLSQPRHFCK TCRRYWTRGG ALRSVPVGGG 120 CRRNKRSKSS SNNNNNNSSK STGGSNVNTN KTIASGTSTS ASPSSCSTEI MNGRHHFPHE 180 QPTQLTPLMA AFQNLNHHYG GFQPNLVSTH HGNGSALSSH HHEMGFQIGN STNTNNTNNL 240 PVPSGGGSDH QWRLPSLAAN TNLYPFQHGS DQGIHESSSG NNNNINGHHD EQGLNSTKQF 300 LGTMENNSNQ YWGGNAWTGG FSGLNSSSSA SHLL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241234.1 | 0.0 | dof zinc finger protein DOF2.4 | ||||
TrEMBL | A0A3Q7H0K4 | 0.0 | A0A3Q7H0K4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g076030.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 1e-44 | OBF-binding protein 3 |