PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g075660.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 164aa    MW: 18988.8 Da    PI: 4.7602
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g075660.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16242547
                        -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        T++E++l ++++ ++G++ W++Ia +++ gRt++++k++w+++
  Sopim06g075660.0.1  2 TPQEELLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTH 42
                        9*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.517147IPR017930Myb domain
SMARTSM007171.2E-11145IPR001005SANT/Myb domain
CDDcd001671.52E-11143No hitNo description
PfamPF002495.9E-15242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-20244IPR009057Homeodomain-like
SuperFamilySSF466895.54E-13251IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MTPQEELLVL QLHSKYGNRW SKIAGKLPGR TDNEIKNYWR THVRKQAQDE KKNTNKASIS  60
PSSSNCSSSS ANSPVEDFRT ERNELLQVAG ENKIYEGDQN MIVYSMDEIW KEVESTEEIE  120
TKNDLPAMAS NTWDYNYCPD SIWMSTHDHY YFDNHQDFSF FTG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0130440.0BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310217.11e-119transcription factor MYB48-like
TrEMBLA0A3Q7HWX11e-118A0A3Q7HWX1_SOLLC; Uncharacterized protein
STRINGSolyc06g075660.2.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.29e-29myb domain protein 48