PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g075370.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 304aa MW: 33659.3 Da PI: 7.5238 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.5 | 4e-40 | 39 | 100 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+a++cprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Sopim06g075370.0.1 39 PEQAINCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 100 6899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.4E-34 | 41 | 97 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-26 | 42 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.376 | 43 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 45 | 81 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MDPSSAQHQH HQELSSQTLE SMLVSTKPQQ QDPKKPKPPE QAINCPRCDS SNTKFCYYNN 60 YSLSQPRYFC KSCRRYWTKG GTLRNVPVGG GCRKNKRSSS SRSSSISSQD QHSIVNTPNN 120 PFPYDSSDLS LAFARLQKQG NGQLGFENHG NLSMMCNENP SGIFLDALRG NTGFLENNNP 180 MNGLIHQQNL YYGVGNIING DIGLHNVENG GLGVNNNDQE VGLMHNYDQE ISSGVTTSTT 240 MTTVKQEMCN MAKDQGDHNR VLWGFPWQIN GEGINMADFD STRRMWNGVG GSSWHGLLNS 300 PLM* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241265.1 | 0.0 | dof zinc finger protein DOF2.1 | ||||
TrEMBL | A0A3Q7H0C2 | 0.0 | A0A3Q7H0C2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g075370.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 2e-38 | Dof family protein |