PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g075250.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 529aa    MW: 58184.8 Da    PI: 9.2519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g075250.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-056385123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Sopim06g075250.0.1 63 FICEICNKGFQRDQNLQLHRRGH 85
                        89*******************88 PP
2zf-C2H2130.00032140162123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H + +
  Sopim06g075250.0.1 140 WKCEKCSKKYAVQSDWKAHTKIC 162
                         58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.51E-76285No hitNo description
PfamPF121716.4E-56385IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355110105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.51E-7135160No hitNo description
SMARTSM00355130140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MMSDDGLSSL AFIQDPNSNP TNNNPNPNSN PSAKRKRNLP GKPDPDAEVI ALSPKSLMAT  60
NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRNKNEVI KKKVYICPEK TCIHHDPSRA  120
LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHTK ICGTREYKCD CGTLFSRKDS  180
FITHRAFCDA LAEESARFTS VPSTANLNFR NEILLNGGFG NTNLQQSTGN PQFGSNLFRP  240
EFMGLGLDPA ISHHHQPQLN NVDGQKPRIP LWLDNNMNPN PGNDFLVASS SSTTSNLPHH  300
ELVQIAAHNN TQQWFINGTG VGDDSGIGSS SSQLPSRVLL KEEEENKRNM SETISSMYYN  360
NHHNETTAPA THMSATALLQ KAAQMGSTRS NSALFGTGFG LMGSSFSKSN GQGQFATHDQ  420
NFNGLMMHSP NNNNSNQGNR LLFGDMNSTS LEGNASGKNS DPFNLMPRNN KGKQVNLSGN  480
EAMEGGLTRD FLGVGGNESR PFLSKNELAK FGNISASAMG LSDYSETH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-37136201368Zinc finger protein JACKDAW
5b3h_F8e-37136201368Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241270.10.0protein indeterminate-domain 9
TrEMBLA0A3Q7H0A70.0A0A3Q7H0A7_SOLLC; Uncharacterized protein
STRINGSolyc06g075250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-106C2H2-like zinc finger protein