PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g074920.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 296aa    MW: 33873.8 Da    PI: 7.8881
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g074920.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l++ ++++G+g +W + ++++g+ R++k+c++rw++yl
  Sopim06g074920.0.1 14 KGPWSPEEDAKLKEFIEKYGNGgNWIALPQKVGLMRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding27.28.7e-0969111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g++++eEd     + ++ G++ W+ Ia+ +   Rt++++k++w++
  Sopim06g074920.0.1  69 GNFSQEEDRVTCSLYARIGSR-WSFIAAQLS-ERTDNNIKNYWNT 111
                         89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.525966IPR017930Myb domain
SuperFamilySSF466895.43E-2611109IPR009057Homeodomain-like
SMARTSM007174.0E-121364IPR001005SANT/Myb domain
PfamPF002491.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-231568IPR009057Homeodomain-like
CDDcd001678.47E-101662No hitNo description
PROSITE profilePS5129412.04967117IPR017930Myb domain
SMARTSM007171.3E-567115IPR001005SANT/Myb domain
PfamPF002492.2E-769111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2069116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKRSPCCDKI NVKKGPWSPE EDAKLKEFIE KYGNGGNWIA LPQKVGLMRC GKSCRLRWLN  60
YLRPNIRHGN FSQEEDRVTC SLYARIGSRW SFIAAQLSER TDNNIKNYWN TKLKKKFIGF  120
IHSSSNILYH PTSTLQTTFQ PQTQSQASIS SIFRDSYIEP IPLVQPNFTY NNNNMMNFQL  180
GTNNQYSYNF HDQSLVYPMQ AISSCSSSDG LSCNQISYGN EEIMCQIPFE ETQKFTLDSY  240
CTTWADHQKA NGYFGNNFQS SQLQYDDHTN IEEIKELISS SSSNGNGCNN VGYWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078574.10.0transcription factor RAX2-like
TrEMBLA0A3Q7H0Q31e-163A0A3Q7H0Q3_SOLLC; Uncharacterized protein
STRINGSolyc06g074920.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-70myb domain protein 36