PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g074320.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 502aa MW: 55600.1 Da PI: 7.0323 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.2 | 1e-09 | 198 | 236 | 5 | 43 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAA++sR RKka++++Le+ L++ + Sopim06g074320.0.1 198 KTLRRLAQNREAAKKSRIRKKAYVQQLETSRIRLSQLEQ 236 6789************************86655555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.8E-5 | 192 | 271 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.1E-7 | 196 | 240 | No hit | No description |
PROSITE profile | PS50217 | 9.059 | 196 | 240 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.1E-8 | 196 | 240 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-6 | 198 | 240 | No hit | No description |
CDD | cd14708 | 3.70E-20 | 198 | 250 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 201 | 216 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.0E-32 | 279 | 353 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MASQGIGETG LTDSGSSHHN HNMPYAVYRG LNPASTSFMY HSTPNGNQEG AGFDFGELEE 60 AFVLQGFKMS NDEAKASLYA AAATGKPAAT LEMFPSWPMR YQQTPRENSK SREESTDSGS 120 LSSRAQPHFE PESPISRKAS SDHQLQITHK SQEQQQLQDM ASNNNPRTGV LQTELSSKSN 180 SEKKKGAAST SERVLDPKTL RRLAQNREAA KKSRIRKKAY VQQLETSRIR LSQLEQELQR 240 ASSQGIFLGG GTAAGSNISS GAAIFDMEYS RWLDDDHRHI AELRTALQAH LSDGDLRLIV 300 DGYLAHYDEI FSLKGVAAKS DVFHLITGTW TTPAERCFLW MGGFRPSELI KMLIGQLDPL 360 TEQQVVGIYS LQQSSQQAEE ALSQGLEQLQ QSLIDTIATA SLHDGMHHMA LALGKLSNLE 420 GFVRQADNLR QQTLHQLHRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLIADDN 480 SCQTITGLQM VQSSQNHFSN F* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT693387 | 0.0 | KT693387.1 Capsicum annuum AILZ1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241320.1 | 0.0 | transcription factor TGA9 isoform X1 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A3Q7H0D9 | 0.0 | A0A3Q7H0D9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g074320.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3683 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-170 | bZIP family protein |
Publications ? help Back to Top | |||
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