PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g071690.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 322aa    MW: 37073.6 Da    PI: 7.6972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g071690.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Sopim06g071690.0.1 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding47.63.8e-1567111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg +++eE++ ++ ++k lG++ W+ Ia++++ gRt++++k++w++ 
  Sopim06g071690.0.1  67 RGMFSQEEEDMIITLHKVLGNR-WAQIAAKLP-GRTDNEIKNFWNSN 111
                         788*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-23964IPR009057Homeodomain-like
PROSITE profilePS5129417.25961IPR017930Myb domain
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
SuperFamilySSF466894.4E-2913108IPR009057Homeodomain-like
PfamPF002498.6E-151461IPR001005SANT/Myb domain
CDDcd001671.69E-101761No hitNo description
PROSITE profilePS5129424.43862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2565117IPR009057Homeodomain-like
SMARTSM007177.6E-1566114IPR001005SANT/Myb domain
PfamPF002499.6E-1467111IPR001005SANT/Myb domain
CDDcd001673.56E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRHSVFVKE KTRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDMIIT LHKVLGNRWA QIAAKLPGRT DNEIKNFWNS NLKRKLIKQG  120
IDPNTHKPLS ENHQVRNEPN CTDKTSSLLM PKLPNMSDSA EIEQPFHFFN SKRNFNSQAV  180
TRELTEVSKN QLVSKQVFDP LFLYEFQASV NPIGPYAHHH NQIEGNQDFG FCSNFQHVHM  240
TTESDISDSS TSRMSTSNSS NTMISHYNSV GIQMNEMLEW DADNKIDSLI QYPYVGIKNE  300
ENYSNNNNTL SGENLHVFHH I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241532.10.0transcription factor MYB86-like
TrEMBLA0A3Q7GZ070.0A0A3Q7GZ07_SOLLC; Uncharacterized protein
STRINGSolyc06g071690.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-75myb domain protein 86