PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g069760.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 493aa MW: 53491.7 Da PI: 6.5082 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116 | 1.5e-36 | 140 | 199 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ Sopim06g069760.0.1 140 PDKILPCPRCNSLDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKNL 199 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-28 | 137 | 197 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.2E-31 | 142 | 198 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.773 | 144 | 198 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 146 | 182 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MTCDSEIKLF GKILPVVVSG VGRGLSGSDG VIYDGNRNGS DLDRCLEGSK ASSVEKDEGS 60 EYEKQEAEKD NITGELSEAK SEEGDQNQMI EESENPKTPS ESESSPKSST EEDPQAVKSS 120 KTENEPTNVT NSEQNNLKKP DKILPCPRCN SLDTKFCYYN NNNVNQPRHF CRSCQRYWTA 180 GGTMRNLPVG AGRRKNKNLA SQYRNISIPE GLLAAGIESP NGLIHHPLFK PNGTILSFGP 240 DLPLCEPMAS ALNQAEKRVS TGIQNGSHKS EVKNSSCKGG DSGDECCRGI NIPTPNMMVE 300 EGKGEPHKAV MHSINGIPSP VPCLHGVPWP FPWNAAVPVS AICPIPFPMP FFPTPYWNCS 360 VPPWSNPWLS PPLRAANEKT SGSDPTSSLG KHSREGDLLK PSNPGGKEQS EQKYSEGSIL 420 VPKTLRIDDP DEAAKSSIWS TLGIKYDSTN RGEFFKALQP KSNDKHNKAN TFPVLHTNPA 480 ALSRSITFQQ GA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315363.1 | 0.0 | Dof zinc finger protein 22 | ||||
TrEMBL | A0A3Q7GYI8 | 0.0 | A0A3Q7GYI8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g069760.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-76 | cycling DOF factor 3 |