PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g069600.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 415aa MW: 46583.5 Da PI: 9.3481 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.6 | 1.7e-16 | 200 | 247 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn+ ErrRRdriN+++ L++l+P+a K +Ka++Le++++Y+k+Lq Sopim06g069600.0.1 200 AVHNQSERRRRDRINEKMKALQKLVPNA-----SKTNKASMLEEVIKYLKQLQ 247 57*************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.3E-18 | 194 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.08E-17 | 194 | 251 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-18 | 194 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.962 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-14 | 200 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-16 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MSHHTWNFSH QKQEQQVVEK EEEENRYTRG HVHNQQNQVD PMSNKCEVAE LTWENGQVAM 60 HRLGSNLSNE QTKHTWGKAG DTLESIVHQA TFQKQHHSYI MGSDGQNQAN INREKNVSYG 120 AQQTRGVLKR MRSSDSDPQL YIGGISLEHL NARASAKDND ITMITWPCNE DSACHGGSEN 180 KEEERETKSS NPSKRSRRAA VHNQSERRRR DRINEKMKAL QKLVPNASKT NKASMLEEVI 240 KYLKQLQAQI QLISYAKNME QQMMMMSLGM QPAHIQMPLL ATMGMCSSTT GILNNMTSNL 300 APAPYQSLIG GRAPLIYPTS SMPTLFPPFM SPPFATASSI PSTPPQPINA ESISPKLTKY 360 AAPPNIAAST SFPFSHPYNA YLPHSMKMEF NNEMAAQYLQ RGNQENVNIQ GQKK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 209 | RAAVHNQSERRRR |
2 | 205 | 210 | ERRRRD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226016 | 0.0 | AC226016.1 Solanum lycopersicum chromosome 6 clone C06SLm0065P01, complete sequence. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242180.1 | 0.0 | transcription factor UNE10-like | ||||
TrEMBL | A0A3Q7H0Y5 | 0.0 | A0A3Q7H0Y5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g069600.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5437 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-39 | bHLH family protein |