PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g068570.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 316aa    MW: 36346.3 Da    PI: 6.9967
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g068570.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.5e-1542101155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n    k+ ++++lg +  +e Aa a++ a++k++g
  Sopim06g068570.0.1  42 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqtKKgRQVYLGAYNEEEAAAHAYDLAALKYWG 101
                         57*******************999977778557*************************98 PP
2AP250.17.1e-16144195155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ ++eeAa a++ a+ +++g
  Sopim06g068570.0.1 144 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYASEEEAAIAYDMAAIQYRG 195
                         79****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-1642111IPR016177DNA-binding domain
PfamPF008478.1E-1242101IPR001471AP2/ERF domain
PROSITE profilePS5103219.25643109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1543109IPR001471AP2/ERF domain
SMARTSM003803.4E-2543115IPR001471AP2/ERF domain
PRINTSPR003671.2E-64455IPR001471AP2/ERF domain
CDDcd000183.63E-24144205No hitNo description
SuperFamilySSF541718.5E-18144205IPR016177DNA-binding domain
PfamPF008471.7E-11144195IPR001471AP2/ERF domain
PROSITE profilePS5103218.162145203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17145203IPR001471AP2/ERF domain
SMARTSM003807.3E-26145209IPR001471AP2/ERF domain
PRINTSPR003671.2E-6185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAKTSKLSKQ NTCLSNKDTD NSISKVKTKR KPRDSPPQRR SSIYRGVTRH RWTGRYEAHL  60
WDKNCWNESQ TKKGRQVYLG AYNEEEAAAH AYDLAALKYW GQHTILNFSV STYEKEIKEM  120
ETQSREEYIG SLRRRSSGFS RGVSRYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYASEE  180
EAAIAYDMAA IQYRGPNAVT NFDISRYNNS LGANPNDMNI PMPNTNKEEK TSSSVVDCPE  240
TPPEVEKCRR ITTFPDDIQT YFDCQDSSSS FVEDSHIIFG DLESFVLPMM FESCHQLEEF  300
LSFSPYSEFE LETSD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241671.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-110AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U8H9641e-153A0A1U8H964_CAPAN; AP2-like ethylene-responsive transcription factor At1g16060
STRINGSolyc06g068570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-94ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]