PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g066540.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 193aa    MW: 21472.1 Da    PI: 4.7351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g066540.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-181765254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++
  Sopim06g066540.0.1 17 IYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALSIK 65
                        69****998.**********843...6**********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.48E-311676No hitNo description
PfamPF008476.0E-131665IPR001471AP2/ERF domain
PROSITE profilePS5103222.7481774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-301775IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-201775IPR016177DNA-binding domain
SMARTSM003802.5E-321780IPR001471AP2/ERF domain
PRINTSPR003671.3E-101829IPR001471AP2/ERF domain
PRINTSPR003671.3E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSKRIRESDE KGNKHPIYRG VRMRSWGKWV SEIREPRKKS RIWLGTYPTA EMAARAHDVA  60
ALSIKKDSSI LNFPHLIDSL PRPISLSPRD VQAAAAEAAA MEDLNYVSST SSVSSIDKIT  120
SASEELGEII ELPSLDGSFE SEESKTELKI SDSVDGWLYP PWWASDGDFD GYLFEQDAVG  180
NSLILSNFEM MK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-191275973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241746.11e-137dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3Q7GXB51e-136A0A3Q7GXB5_SOLLC; Uncharacterized protein
STRINGSolyc06g066540.1.11e-137(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]