PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim06g066390.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 406aa MW: 46380 Da PI: 9.6821 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.8 | 3.7e-15 | 81 | 140 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g Sopim06g066390.0.1 81 SRFRGVSRHRWTGRYEAHLWDkGSWNVtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 140 789******************888855555447*************************98 PP | |||||||
2 | AP2 | 52.3 | 1.4e-16 | 183 | 234 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Sopim06g066390.0.1 183 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 234 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.66E-16 | 81 | 150 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-12 | 81 | 140 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.22E-20 | 81 | 150 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.8E-15 | 82 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.414 | 82 | 148 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-24 | 82 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-5 | 83 | 94 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-12 | 183 | 234 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.72E-25 | 183 | 244 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-18 | 183 | 244 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-18 | 184 | 243 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-26 | 184 | 248 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 184 | 242 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-5 | 224 | 244 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 406 aa Download sequence Send to blast |
MDLNKDSYLV KSEMSSPGKR SMSMVDYGIP ETTKRVKRRR RSPPAVGVVN DNIGQQAEQQ 60 KMDSSKVDQN IAHTPTVKRS SRFRGVSRHR WTGRYEAHLW DKGSWNVTQK KKGKQVYLGA 120 YDEEESAARA YDLAAIKYWG TSTFINFPIS DYEKEIEIMQ TVTKEEYLAS LRRRSSGFAR 180 GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI EYRGINAVTN 240 FDLSTYIRWL KPGVNTQMAF QELRSENQAI QTNTNDIINP INDPQFTFGS NYFSTTRETL 300 PPIPQSQEPI ERKMPLSPCN KPPSPTALSL LLRSSMYREL VEKNSTTIAN EKDDPNMKNK 360 QQVNTEDEFV FYRSDKLPAL ESMDEGTTSS HLGDRAGQSF WDVMP* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365981.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A3Q7GWA6 | 0.0 | A0A3Q7GWA6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g066390.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3440 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54320.3 | 5e-94 | AP2 family protein |