PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g065100.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 31216.5 Da PI: 8.8711 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl Sopim06g065100.0.1 14 KGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLSRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 59 | 1.1e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++ Sopim06g065100.0.1 67 RGNFTEEEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.832 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.29E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.499 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0090378 | Biological Process | seed trichome elongation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR AHGEGCWRSL PKAAGLSRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG 120 IDPQTHRPLN NNATNSHTTT NITTAVTTKN INLDFTNVDQ KQPNIMIATS SSYDETKCNS 180 GTTEETKPLE IIIPKIPSQV MINLELSIGL PLHTDHISSP ESTASYNFLT TVAPPPTAAV 240 PAAEMMAKTV CLCWQIGYHG GGGQWCGKCK NTNGFYRYC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 3e-30 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209513 | 0.0 | AC209513.1 Solanum lycopersicum chromosome 6 clone C06HBa0286N17, complete sequence. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241841.1 | 0.0 | myb-related protein 330 | ||||
Swissprot | P81395 | 1e-104 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A3Q7HS25 | 0.0 | A0A3Q7HS25_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g065100.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 7e-90 | myb domain protein 4 |
Publications ? help Back to Top | |||
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