PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g065100.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 280aa    MW: 31216.5 Da    PI: 8.8711
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g065100.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Sopim06g065100.0.1 14 KGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLSRCGKSCRLRWINYL 61
                        79********************************************97 PP

2Myb_DNA-binding591.1e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++
  Sopim06g065100.0.1  67 RGNFTEEEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111
                         89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.832961IPR017930Myb domain
SMARTSM007172.4E-141363IPR001005SANT/Myb domain
SuperFamilySSF466892.29E-3013108IPR009057Homeodomain-like
PfamPF002497.7E-161461IPR001005SANT/Myb domain
CDDcd001671.64E-101661No hitNo description
PROSITE profilePS5129428.49962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2865117IPR009057Homeodomain-like
SMARTSM007177.9E-1866114IPR001005SANT/Myb domain
PfamPF002496.4E-1767111IPR001005SANT/Myb domain
CDDcd001671.41E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR AHGEGCWRSL PKAAGLSRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG  120
IDPQTHRPLN NNATNSHTTT NITTAVTTKN INLDFTNVDQ KQPNIMIATS SSYDETKCNS  180
GTTEETKPLE IIIPKIPSQV MINLELSIGL PLHTDHISSP ESTASYNFLT TVAPPPTAAV  240
PAAEMMAKTV CLCWQIGYHG GGGQWCGKCK NTNGFYRYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30141167108B-MYB
1h8a_C3e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095130.0AC209513.1 Solanum lycopersicum chromosome 6 clone C06HBa0286N17, complete sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241841.10.0myb-related protein 330
SwissprotP813951e-104MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A3Q7HS250.0A0A3Q7HS25_SOLLC; Uncharacterized protein
STRINGSolyc06g065100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.17e-90myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]