PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g065040.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 255aa    MW: 27880.1 Da    PI: 6.7891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g065040.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-13189234655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Sopim06g065040.0.1 189 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 234
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16186244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.17E-13187238No hitNo description
Gene3DG3DSA:4.10.280.101.0E-16188246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10189234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQRGTTGDGG GGLSRFRSAP ATWLEALLES DTESEVILNP SSPILHTPNK PPPHPSTPKL  60
KLETGGATRF TGDPGLFESG GSSNFLRQNS SPAEFLSHIS SDGYFSNYGI PSSLDYLSPS  120
VDVSQSAKRT RDDDSESSPR KLVSQLKGES SGQLHGSGGS LDAEMENLMD DLVPCKVRAK  180
RGCATHPRSI AERVRRTRIS DRIRKLQELV PNMDKQTNTA DMLEEAVEYV KFLQRQIQEL  240
TEHQKKCTCS MKDQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315191.10.0transcription factor bHLH81-like
SwissprotQ9C8P81e-73BH080_ARATH; Transcription factor bHLH80
TrEMBLM1D3H51e-173M1D3H5_SOLTU; Uncharacterized protein
STRINGSolyc06g065040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-60bHLH family protein