PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim06g064540.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 149aa MW: 16955.5 Da PI: 8.5937 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 5e-39 | 13 | 113 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk lrr+C++dC++ pyfp ++p++f +vh+++Gasnv kll++++e++r d+++sl+yeA +r++ PvyG+vg+i+ l+q++++l+ Sopim06g064540.0.1 13 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHRIYGASNVGKLLQQVQEHQRADVADSLYYEAYCRIKSPVYGCVGIITILHQEIDRLE 103 6****************************************************************************************** PP DUF260 92 aelallkeel 101 el+++++e+ Sopim06g064540.0.1 104 RELVKVQAEI 113 *****99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.406 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-38 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 149 aa Download sequence Send to blast |
MVDLQNVLMN SRRCAACKQL RRRCPSDCIF LPYFPPNNPQ RFSFVHRIYG ASNVGKLLQQ 60 VQEHQRADVA DSLYYEAYCR IKSPVYGCVG IITILHQEID RLERELVKVQ AEISLVKGQT 120 QIEGQLAQGQ QVQLSSSSFH LPTTTPWF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-37 | 14 | 113 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-37 | 14 | 113 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00381 | DAP | Transfer from AT3G26620 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-151 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027773287.1 | 7e-99 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 7e-47 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 5e-47 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A3Q7HRS9 | 1e-100 | A0A3Q7HRS9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g064540.1.1 | 1e-107 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-49 | LOB domain-containing protein 24 |