PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g060940.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 539aa MW: 59785.2 Da PI: 8.4118 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.4 | 6.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Sopim06g060940.0.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 ****************66666***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.2E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-11 | 5 | 45 | No hit | No description |
CDD | cd00202 | 2.93E-16 | 6 | 54 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.3E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 9.8E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 4.0E-9 | 284 | 366 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RPESDDLDDY 60 RVCRVKNMSL KNKEAKVLKQ KQNHDNTVVR TPPDYYQGFL KSLDEDTSNR SSSGSAISNT 120 ESSAQFGSTE ASDLTGPAQS NKWEAMVPSR KRTCISRSKH SSVEKLTKDL CTILHEQQSS 180 YFSGSSEEDL LFESDKPMVS VEIGHGSVLI RHPNSIGREE ESEGSSLSVN NKRHYVNEAY 240 SRLSAPPVNI NRGVNLPNLG TEITKKPNSQ GMEQHPIKRD KDHLEKLHIL GHHTSPLCHI 300 DLKDVLNYEE FVTHFSSDEQ KQLLKYLAPV DSFAPPDSLK SMFHSSHFEE NLSSFQKLLA 360 EGVFDSSLPG VKLEDSRTLK RLILCYLTKS KWVEKYNLFK EPKCTSSANG NEVTGRPNAI 420 GTGHSGNVKR PLEGHHPKYA GAKKAMKSPK RVVMKSSYEQ KELVDNNNSC FSPKCLFPLP 480 SKSSPVLDSF HVTNDQDVLL DVPSNSSFAQ AELLLPTSNF AAQASTGSSS VYPHLVRP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241983.1 | 0.0 | GATA transcription factor 26 isoform X1 | ||||
Swissprot | Q8W4H1 | 1e-143 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A3Q7GXK1 | 0.0 | A0A3Q7GXK1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g060940.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2089 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-147 | GATA transcription factor 26 |