PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g053610.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 30406.2 Da PI: 6.8724 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l+ +++ G +W++ ++ g+ R++k+c++rw +yl Sopim06g053610.0.1 14 KGPWTPQEDNILISYIQNNGHSNWRALPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w++ Sopim06g053610.0.1 67 RGNFTKEEEDTIIKLHENLGNR-WSAIAARLP-GRTDNEIKNIWHTN 111 89********************.*********.*********99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.625 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-29 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.011 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.53E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGRAPCCEKM GLKKGPWTPQ EDNILISYIQ NNGHSNWRAL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TKEEEDTIIK LHENLGNRWS AIAARLPGRT DNEIKNIWHT NLKKKLKNYQ 120 PCQNSKRHSK TSHVSNKGPT TSESSNNSDL STSTKQHIKI APNSPQLSSS EMSSVTLVVD 180 DNQMVIIKEE KIESSSSEYF PKIDESFWAD ELSTENNMII GHDQEIQVRE ENVDIFTTSS 240 KMEEDMDFWY NVFIKTGDLP ELPEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X98308 | 0.0 | X98308.1 L.esculentum mRNA for myb-related protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234262.1 | 0.0 | R2R3MYB transcription factor 14 | ||||
Swissprot | Q9LTC4 | 8e-88 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | Q40174 | 0.0 | Q40174_SOLLC; THM18 protein | ||||
STRING | Solyc06g053610.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 8e-86 | myb domain protein 15 |