PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim06g053350.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 435aa MW: 47522.6 Da PI: 6.4107

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g053350.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.8e-10	226	284	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l +e+ Sopim06g053350.0.1 226 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSTQLTLLQRDTNGLNAEN 284 9********************************************99998877776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-15	222	286	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.932	224	287	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.6E-9	226	282	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	226	277	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-10	226	280	No hit	No description
CDD	cd14703	8.85E-19	227	263	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MDKDKSSSSH IGGSLPPSGR YSLFSPPGSS SNVKSEQPGL ANLPPLGPGN ASESGHFGHG 60 LSADSSLFSL DISRMSDNPP RKFGHRRAHS EILTLPDDIS FDSDLGVVGL DGPSLSDETE 120 EDILSMYLDM DKFNSSTLSS EFQVGESSSA APGSSQTTAM ASGTNKFAPT VSEKPRVRHQ 180 HSQSMDGSTT IKPEMLMSGV EEPSSAETKK ATSAAKLAEL ALIDPKRAKR IWANRQSAAR 240 SKERKMRYIA ELERKVQTLQ TEATTLSTQL TLLQRDTNGL NAENSELKLR LQTMEQQVHL 300 QDALNDALKE EIQHLKVLTG QGIANGGPMM NFPATFGGNQ QFYSNNQAMH TLLAAQQLQQ 360 LQLHSHKQQH QFQQHQLHQF QQQQLQHQQQ QQQPLMQQQQ QQDQLSQAGD VMSRGSLSSP 420 QNENASDVSS VAKD*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MDKDKSSSSH IGGSLPPSGR YSLFSPPGSS SNVKSEQPGL ANLPPLGPGN ASESGHFGHG  60
LSADSSLFSL DISRMSDNPP RKFGHRRAHS EILTLPDDIS FDSDLGVVGL DGPSLSDETE  120
EDILSMYLDM DKFNSSTLSS EFQVGESSSA APGSSQTTAM ASGTNKFAPT VSEKPRVRHQ  180
HSQSMDGSTT IKPEMLMSGV EEPSSAETKK ATSAAKLAEL ALIDPKRAKR IWANRQSAAR  240
SKERKMRYIA ELERKVQTLQ TEATTLSTQL TLLQRDTNGL NAENSELKLR LQTMEQQVHL  300
QDALNDALKE EIQHLKVLTG QGIANGGPMM NFPATFGGNQ QFYSNNQAMH TLLAAQQLQQ  360
LQLHSHKQQH QFQQHQLHQF QQQQLQHQQQ QQQPLMQQQQ QQDQLSQAGD VMSRGSLSSP  420
QNENASDVSS VAKD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013485	0.0	BT013485.1 Lycopersicon esculentum clone 132168R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025887292.1	0.0	probable transcription factor PosF21
Refseq	XP_025887293.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-146	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0V0INP2	0.0	A0A0V0INP2_SOLCH; Putative transcription factor PosF21-like
STRING	Solyc06g053350.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3965	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-125	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]