PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g053240.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 32aa    MW: 3687.33 Da    PI: 11.7349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g053240.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.38.7e-09525122
                 AP2  1 sgykGVrwdkkrgrWvAeIrdp 22
                        +++kGVr++  +g+Wv+eIr+p
  Sopim06g053240.0.1  5 KKFKGVRQRQ-WGSWVSEIRHP 25
                        59*****999.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-10628IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-5629IPR016177DNA-binding domain
PROSITE profilePS510329.335631IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 32 aa     Download sequence    Send to blast
MVQSKKFKGV RQRQWGSWVS EIRHPLLKGY G*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-36HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-36HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.22e-14ERF family protein