PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim06g049040.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 332aa MW: 36705.8 Da PI: 6.4451

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g049040.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.8e-10	140	195	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i eLe+kv++L+ae ++L +l +++ kl+ Sopim06g049040.0.1 140 KRAKRILANRQSAARSKERKTRYISELERKVQTLQAEATTLSTQLTLFQNTELKLR 195 9*****************************************99998888777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-12	136	200	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.99	138	195	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-9	140	197	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.34E-10	140	190	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-10	140	196	No hit	No description
CDD	cd14703	5.69E-21	141	190	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MQDPSNPNSI KLPTTTFSAA FRPSHHRRAH SEVNFRLPED LDLVSDPFDA PAGSFEEIGS 60 EDDFFSTYMD IEKLASGSNL TDIDAAAARV GVESSDGEKK PRHRHSNSVD SSSLLMTESI 120 EAKKAMAPDK LAELWTIDPK RAKRILANRQ SAARSKERKT RYISELERKV QTLQAEATTL 180 STQLTLFQNT ELKLRLQAME QQAQLRDALN EALKQEVERL KIATGQISAS SDAYSSGMQQ 240 IQYNRPAFFP HQTQPGPSES HNIQMSQFHH LQDSMSNPRH PLLSGNVQAL ADAMQQDPVG 300 RFQGLDISSR GSHLVKSEAP SISASESSTT F*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240865.1	0.0	transcription factor RF2b-like
Swissprot	O22873	1e-101	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A3Q7GV72	0.0	A0A3Q7GV72_SOLLC; Uncharacterized protein
STRING	Solyc06g049040.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-101	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]