PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g036170.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 599aa    MW: 66002.4 Da    PI: 7.1282
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g036170.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.33.3e-1042295972373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++ ++e+A+a+ +g+++ a ++L+rl + a  +g++ qRl+ay++ AL++r+++    +    p+ e    +s+e++ + + ++e+sP++k
  Sopim06g036170.0.1 229 RQSIVEAATAIIDGKTNVAVQILTRLAQVADVRGSSEQRLTAYMVSALRSRVNS----TEYPPPVMEL---RSKEHAVSAQNLYEISPCFK 312
                         57899************************************************9....2223334444...48899999999********* PP

                GRAS  93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefn 179
                         +++++aN aI+eav+ +  +++H+iDfdi+qG+Q++ Ll+aLas++ + p slRiT++  + ++   ++l+++++ L+++A+++g+++ f+
  Sopim06g036170.0.1 313 LGFMAANFAIVEAVADHpsNKIHVIDFDIGQGGQYLHLLHALASKKTDYPiSLRITAITTEFTVrADHSLKSIEDDLRSLANKIGISLIFK 403
                         ***************9999************************99977776*********87778999*********************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         v ++++++dl+  +L ++++EalaVn++++l+rl+desv++e+ rde+L+ vk+lsPkvv++veqe++ n++ F++r+ ea+ yy al+ds
  Sopim06g036170.0.1 404 V-ISRTITDLSRGKLGIEHDEALAVNFAYRLYRLPDESVTTENLRDELLRRVKGLSPKVVTLVEQELNGNTAAFVARVNEACGYYGALLDS 493
                         9.7**************************************************************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslv 359
                         l+a+++re+  r+k+E+  l+r+++n vaceg++r er+e ++kWr+r+++aGF+p p+s+++a++    l+  +  + g++v+e+sg + 
  Sopim06g036170.0.1 494 LDATVSREETGRVKIEEG-LSRKLTNSVACEGRDRLERCEVFGKWRARMSMAGFGPRPMSQQIADSLLKRLNSGPrgNPGFNVNEQSGGIR 583
                         ******************.*******************************************999987777766557899*********** PP

                GRAS 360 lgWkdrpLvsvSaW 373
                         +gW++++L+++SaW
  Sopim06g036170.0.1 584 FGWMGKTLTVASAW 597
                         ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.794202576IPR005202Transcription factor GRAS
PfamPF035141.1E-101229597IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MSSDFSGGVP DFHGGAGRSS LIPMNNSQPQ IQLTQRPDGV SQNLHRRPMF IGKRSLAAFQ  60
QQQQFQFLQQ QQQQQGLGFY LRNVKPRNYQ QASPISPLDY SVSSSLISSE FSPMTPRHPL  120
PISTANTNGV LSSGNPNCSA VASYLNQVQN SLYQESEEKM MNRLHELEKQ LLEDNNEEEE  180
DTVSVVTNND EWSETIKNLI TPTSNHLSPA SSTSSCSSSM ESPPVSSPRQ SIVEAATAII  240
DGKTNVAVQI LTRLAQVADV RGSSEQRLTA YMVSALRSRV NSTEYPPPVM ELRSKEHAVS  300
AQNLYEISPC FKLGFMAANF AIVEAVADHP SNKIHVIDFD IGQGGQYLHL LHALASKKTD  360
YPISLRITAI TTEFTVRADH SLKSIEDDLR SLANKIGISL IFKVISRTIT DLSRGKLGIE  420
HDEALAVNFA YRLYRLPDES VTTENLRDEL LRRVKGLSPK VVTLVEQELN GNTAAFVARV  480
NEACGYYGAL LDSLDATVSR EETGRVKIEE GLSRKLTNSV ACEGRDRLER CEVFGKWRAR  540
MSMAGFGPRP MSQQIADSLL KRLNSGPRGN PGFNVNEQSG GIRFGWMGKT LTVASAWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4225559724374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240721.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-143SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A3Q7GUI20.0A0A3Q7GUI2_SOLLC; Uncharacterized protein
STRINGSolyc06g036170.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-134SCARECROW-like 8