PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g035940.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 677aa MW: 75633.6 Da PI: 5.5787 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 8e-18 | 30 | 80 | 3 | 53 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +R++f+ +q++eLe++F+ +++p++++++eLA+k +++++qV++WFqN+R Sopim06g035940.0.1 30 RRHKFSVNQIHELESVFKVSSHPDEKTKQELATKFSVDKKQVQFWFQNKRS 80 89************************************************7 PP | |||||||
2 | START | 164.3 | 8.5e-52 | 209 | 431 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la++a++el+k+a ++ep+Wv+ e++n +e+ ++f + + +++ea r sg v +++ +lve l++ + qW e ++ k+ Sopim06g035940.0.1 209 LALDALNELLKLAMSDEPLWVRNLdgggEMLNMEEYATTFIPIIGikpshFTTEATRSSGTVVGNSLTLVEMLMNES-QWVEAFPciigKV 298 7899************************************88777999999**************************.************* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 t +vis+g g+l l+ aelq +s +vp R+ f+R+++++ +++w+ivdvSvd ++ +++ ++ ++++lpSg++i+++sng+sk Sopim06g035940.0.1 299 NTFDVISTGigegksGTLLLIEAELQIISNVVPvREIKFLRFCQKHAEDSWIIVDVSVDTIKEGSQQYKIEKCRRLPSGCIIQDMSNGYSK 389 *****************************************************************9************************* PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 vtw+eh+++++ ++ l+r+l++ gl +ga++w++ lqrq e Sopim06g035940.0.1 390 VTWIEHMEYDEIFVDHLYRPLIRAGLGFGAQRWMSSLQRQSE 431 ***************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-16 | 18 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.94E-15 | 19 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.613 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-13 | 27 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-15 | 30 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.96E-14 | 30 | 86 | No hit | No description |
PROSITE profile | PS50848 | 39.771 | 199 | 435 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.22E-25 | 201 | 430 | No hit | No description |
SMART | SM00234 | 1.8E-35 | 208 | 432 | IPR002913 | START domain |
Pfam | PF01852 | 6.6E-45 | 209 | 431 | IPR002913 | START domain |
CDD | cd08875 | 1.03E-96 | 216 | 431 | No hit | No description |
SuperFamily | SSF55961 | 2.2E-5 | 458 | 644 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MEKSTMELSN NRDGGVSGDE LTSPDGSSER RHKFSVNQIH ELESVFKVSS HPDEKTKQEL 60 ATKFSVDKKQ VQFWFQNKRS ISKTQSERYN KRVLQQENEK LRTEYAAMRE VMKKSICDPC 120 RNKDTTIRNE NVDEKEILNE HARLKDELAR IAIHADKSLG SSSFLEGSLT SMMEKFGLEL 180 NEVDFGKYLS SPLPTNLDVT LDKSMLLNLA LDALNELLKL AMSDEPLWVR NLDGGGEMLN 240 MEEYATTFIP IIGIKPSHFT TEATRSSGTV VGNSLTLVEM LMNESQWVEA FPCIIGKVNT 300 FDVISTGIGE GKSGTLLLIE AELQIISNVV PVREIKFLRF CQKHAEDSWI IVDVSVDTIK 360 EGSQQYKIEK CRRLPSGCII QDMSNGYSKV TWIEHMEYDE IFVDHLYRPL IRAGLGFGAQ 420 RWMSSLQRQS ELLRVMASFV NSTVDPKGEI GMGILSQRMT RSFCAVICAT SHKWITIQKE 480 NGKDANLMMR RNISDAGEPI GVILSATKTI QLPIKSQCLF QFFTNKNLRR QWDILSCSGA 540 MENIIHINKD ENLESSVSLL CANGGANENN MMIFQDTCTD ATGSLLVYAI VDSSKMNTVM 600 KGGDPSCVEL LPNGISILPD LSANNNKEFG SGSLVTIMFQ MLVDNISTAD LPQKSIVDAN 660 DIISHTIHKI KSALLI* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240735.1 | 0.0 | homeobox-leucine zipper protein HDG1 isoform X2 | ||||
TrEMBL | A0A3Q7HLS6 | 0.0 | A0A3Q7HLS6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g035940.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA20922 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 1e-177 | HD-ZIP family protein |