PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g035700.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 179aa    MW: 19263.4 Da    PI: 4.5739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g035700.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.5e-152977255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++G+r++  +g+Wv+eIr+p++   ++r++lg+f  +e+Aa a++ a+++l+g
  Sopim06g035700.0.1 29 NFRGIRQR--NGKWVSEIREPRK---TTRIWLGTFPIPEMAAVAYDVAALALKG 77
                        589**975..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-92877IPR001471AP2/ERF domain
CDDcd000181.17E-282886No hitNo description
PROSITE profilePS5103219.6122985IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-272986IPR001471AP2/ERF domain
SMARTSM003806.4E-302991IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-173086IPR016177DNA-binding domain
PRINTSPR003678.3E-73041IPR001471AP2/ERF domain
PRINTSPR003678.3E-76787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAAYHFNDNS PSLENLSPTG GGSSTRHPNF RGIRQRNGKW VSEIREPRKT TRIWLGTFPI  60
PEMAAVAYDV AALALKGPDA QLNFPDRAYS YPVPASLSAA DIRTAAANAA AARAPPLSEI  120
NTAAGGGQGQ EFVDEEEIFG MPKLLDDMAE AMLVSPPRMH QYDESPENSD ADSLWGYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-131685172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240742.11e-129ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ901e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3Q7GUB51e-128A0A3Q7GUB5_SOLLC; Uncharacterized protein
STRINGSolyc06g035700.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-44ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]