PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g034000.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 237aa    MW: 27326.9 Da    PI: 6.798
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g034000.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-14653148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ed++lvd++ ++   +W+  ++  g+ Rt+k+c++rw +yl
  Sopim06g034000.0.1  6 KGAWSPDEDQKLVDYIMKYRIWNWSHMPKFAGLSRTGKSCRLRWINYL 53
                        79*****************999************************97 PP
2Myb_DNA-binding43.86e-1459104148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+++ eE e+ ++  + lG++ W++Ia++++ gRt++++k++++++l
  Sopim06g034000.0.1  59 KGPFSIEEVEIVIRMYQSLGNR-WSAIAKELP-GRTDNEIKNFYHTHL 104
                         799*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.547153IPR017930Myb domain
SuperFamilySSF466891.92E-274100IPR009057Homeodomain-like
SMARTSM007174.2E-11555IPR001005SANT/Myb domain
PfamPF002491.0E-12653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-21760IPR009057Homeodomain-like
CDDcd001672.34E-8853No hitNo description
PROSITE profilePS5129422.15454108IPR017930Myb domain
SMARTSM007171.3E-1358106IPR001005SANT/Myb domain
PfamPF002492.3E-1259104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2461108IPR009057Homeodomain-like
CDDcd001671.72E-961104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDYVKKGAWS PDEDQKLVDY IMKYRIWNWS HMPKFAGLSR TGKSCRLRWI NYLRPDLKKG  60
PFSIEEVEIV IRMYQSLGNR WSAIAKELPG RTDNEIKNFY HTHLKKHLGT KVEVKPKSRK  120
KAKQIEMSTQ KKPLITNCPN IQSLDFTNSS SSSSYITFDE NYDFLETSNQ HNDVTSIVNQ  180
VDDENIVILE SNPDDTTSSS SSVDLHIKDF MDVSVDSSNV VDFWLELYMA ADNLKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2461107110B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240768.11e-176transcription factor MYB30
TrEMBLA0A3Q7GR981e-175A0A3Q7GR98_SOLLC; Uncharacterized protein
STRINGSolyc06g034000.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-47myb domain protein 14