PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g033870.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 248aa    MW: 28586.3 Da    PI: 8.1846
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g033870.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48e-141966148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ed++l+d ++++   +W+  ++  g+ Rt+k+c++rw +yl
  Sopim06g033870.0.1 19 KGAWSPQEDKKLIDHIAKYRIWNWSQMPKFAGLSRTGKSCRLRWINYL 66
                        79*****************999************************97 PP
2Myb_DNA-binding39.41.4e-1272117148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg ++ eE + +++  + lG++  ++Ia++++ gRt++++k++++++l
  Sopim06g033870.0.1  72 RGTFSLEETQTIIKMYQSLGNR-RSAIAKELP-GRTDNEIKNFYHTHL 117
                         899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.811470IPR017930Myb domain
SuperFamilySSF466891.15E-2517113IPR009057Homeodomain-like
SMARTSM007174.0E-111868IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-212073IPR009057Homeodomain-like
CDDcd001671.10E-82166No hitNo description
PfamPF139211.3E-122282No hitNo description
SMARTSM007171.6E-1071119IPR001005SANT/Myb domain
PROSITE profilePS5129412.43671121IPR017930Myb domain
CDDcd001675.21E-874117No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2174120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGEVVFQLQH GKNMGYVKKG AWSPQEDKKL IDHIAKYRIW NWSQMPKFAG LSRTGKSCRL  60
RWINYLRPDI KRGTFSLEET QTIIKMYQSL GNRRSAIAKE LPGRTDNEIK NFYHTHLKKH  120
VGTKVEVKPK SRKKAKQIEM STQKKPLITT NCPNIQSFDF TNSSSSSSYI IFDENYDFLE  180
TYNQENDVTS IVNQVDDENI VILESNPESI STSSVDLYIQ DFMDVSIDSS NVDFWLELYM  240
AADNLNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-231912127128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078427.10.0transcription factor MYB14-like
TrEMBLK4C4L10.0K4C4L1_SOLLC; Uncharacterized protein
STRINGSolyc06g033870.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.18e-49myb domain protein 14