PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g009610.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 865aa MW: 98029.8 Da PI: 5.3106 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 302.6 | 9.2e-93 | 494 | 862 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPi 90 lv+lLl++Ae v++++++la++ +a+ as +g+p+qRl +yf eAL++r+ r + + + + + s+ ++ +l + + P+ Sopim06g009610.0.1 494 LVHLLLAAAEEVDQQQFHLASQSIAHCLWKASATGNPIQRLCFYFGEALQERIDReIGRSPCFERKLRFLSTLALGNTPESL-TCHTEIPF 583 68*****************************************************322221111222222222233333333.355667** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 ++ +++ NqaI+e v+g++++H +Df+i G+QW L+qaL++R++ p l+iT++g+ ++k+++eetg+rL++fA++l++pf+f++ Sopim06g009610.0.1 584 SQVMQFAGNQAIVEYVKGATKIHLVDFNIRSGIQWTGLMQALSERRNCPIeLLKITAIGH---QEKQKIEETGKRLQSFANSLNLPFSFDM 671 *******************************************9996665499*******...579************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 + +++++dl+ e+ ++k +E++aV + l ++ + +++ d++++++++l+P vvvv+e ea++ns+sFl+rf+eal +ys+lfd++ Sopim06g009610.0.1 672 IFMSDMKDLKAESVNLKADETVAVYCYTVLRTMI----CRQDYLDNTMRVIRGLRPSVVVVCEVEANLNSPSFLNRFVEALFFYSVLFDCF 758 ****************************999998....77778888********************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361 e + r++ r+ +E + +g+ i+n+va+egaer+ r+ +l Wr+ + ++G+ +++lse+ qa+l+l++++ + v+++ ++l+ g Sopim06g009610.0.1 759 EDCMDRDNLVRKRIEVFHIGEGIRNMVAAEGAERFTRNVKLDVWRAYFARFGMVEMELSESSRYQANLILKQFShGSSCIVQKDGKALLVG 849 **************************************************************************777788999999999** PP GRAS 362 WkdrpLvsvSaWr 374 Wk+ p+ svS W+ Sopim06g009610.0.1 850 WKGTPIESVSIWK 862 ************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.337 | 468 | 841 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-90 | 494 | 862 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 865 aa Download sequence Send to blast |
MGSSSKFYVS VSKDYVVNML RESFQCLTII LLSLLLPLSF IVLARLSVTR YLIATSDYTE 60 PNTLLVKLFL YANPIFLRLL TPLVTISALT QCLTGRTLTD HIMISKSHLY MSWLILFTFQ 120 ICVSIGIEGS IAVGIDGSTS FSHQRLYLLT RSMFFMGLHE TTLFWSKKVV KPVVDDTIFG 180 VEKEDRYVEK VAMAMSFGIL WWCKLGDEVE SLVVVAEMKR DLFGSVGLVD FVGWWLYYVT 240 VAIGMVKVVK GLIWLNFVLF CGNMVVGSDN AGSCTRNDEK MDQIPIPTID FSVFQDGHNH 300 VQECGRNELI NNGAVDPWFE LDSEDLDSLY TVFDLKYQDN TADKQVQSLE DQQQSISDHW 360 TQSDDSSNMD LPLQFIQIKT TPEASDGIQP QEPRLDNFHG EKTNSISLAS LELLNNCGRL 420 FKKPSEENLS NVLLSNEARV SNISKLSTEE ILRVAGERYI QYSTQRVDGL SMFIHPYASS 480 LSGLSIEETK DMELVHLLLA AAEEVDQQQF HLASQSIAHC LWKASATGNP IQRLCFYFGE 540 ALQERIDREI GRSPCFERKL RFLSTLALGN TPESLTCHTE IPFSQVMQFA GNQAIVEYVK 600 GATKIHLVDF NIRSGIQWTG LMQALSERRN CPIELLKITA IGHQEKQKIE ETGKRLQSFA 660 NSLNLPFSFD MIFMSDMKDL KAESVNLKAD ETVAVYCYTV LRTMICRQDY LDNTMRVIRG 720 LRPSVVVVCE VEANLNSPSF LNRFVEALFF YSVLFDCFED CMDRDNLVRK RIEVFHIGEG 780 IRNMVAAEGA ERFTRNVKLD VWRAYFARFG MVEMELSESS RYQANLILKQ FSHGSSCIVQ 840 KDGKALLVGW KGTPIESVSI WKFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-47 | 512 | 862 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321870.2 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | K4C3Z1 | 0.0 | K4C3Z1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g009610.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-50 | RGA-like 1 |