PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g009410.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 30824.7 Da PI: 8.9364 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.5 | 6.6e-13 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed +l++ + +G g+W++ a+ g++R+ k+c++rw++yl Sopim06g009410.0.1 10 KGPWSSDEDSKLIHSISIFGQGRWDSLAHVAGLKRSCKSCRLRWLNYL 57 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 33.5 | 9.8e-11 | 63 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 rg+ T++E+ l++ ++ ++G++ +W++Ia+ ++ gR+ +++k++w++ Sopim06g009410.0.1 63 RGKITPQEQVLILLLHFRFGNRygnnyfiffskiknRWSKIAENLP-GRSYNDVKNYWRT 121 8999******************************************.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.695 | 5 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-21 | 7 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-13 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-12 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-9 | 12 | 57 | No hit | No description |
PROSITE profile | PS50090 | 8.641 | 58 | 123 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.2E-8 | 62 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-9 | 63 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-16 | 65 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.96E-6 | 67 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MKQVSMEMNK GPWSSDEDSK LIHSISIFGQ GRWDSLAHVA GLKRSCKSCR LRWLNYLRPN 60 LRRGKITPQE QVLILLLHFR FGNRYGNNYF IFFSKIKNRW SKIAENLPGR SYNDVKNYWR 120 TKVQKHAKEL HCEINSQQFR HFLLYQWMPS LLAQQIPTSS SSSSYFELIV TGNYSPNNIN 180 AYLNVNIISS TDSFLREDDS NIWNNLSSFE DGINIPRDFS TPSYMKLHNY SSHDEDDQYY 240 FHNYWTSAEM PSLYEMDHWL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-19 | 1 | 125 | 18 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078167.1 | 1e-152 | transcription factor MYB78-like | ||||
Swissprot | Q10MB4 | 3e-56 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A2G3C3H6 | 2e-98 | A0A2G3C3H6_CAPCH; Transcription factor | ||||
STRING | Solyc06g009410.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15393 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 6e-55 | myb domain protein 112 |
Publications ? help Back to Top | |||
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