PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g009410.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 261aa    MW: 30824.7 Da    PI: 8.9364
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g009410.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.6e-131057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+ +Ed +l++ +  +G g+W++ a+  g++R+ k+c++rw++yl
  Sopim06g009410.0.1 10 KGPWSSDEDSKLIHSISIFGQGRWDSLAHVAGLKRSCKSCRLRWLNYL 57
                        79******************************99************97 PP

2Myb_DNA-binding33.59.8e-1163121146
                         TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E+ l++ ++ ++G++              +W++Ia+ ++ gR+ +++k++w++
  Sopim06g009410.0.1  63 RGKITPQEQVLILLLHFRFGNRygnnyfiffskiknRWSKIAENLP-GRSYNDVKNYWRT 121
                         8999******************************************.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.695561IPR017930Myb domain
SuperFamilySSF466894.12E-217119IPR009057Homeodomain-like
SMARTSM007172.1E-13959IPR001005SANT/Myb domain
PfamPF002496.6E-121057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-181164IPR009057Homeodomain-like
CDDcd001671.00E-91257No hitNo description
PROSITE profilePS500908.64158123IPR017877Myb-like domain
SMARTSM007171.2E-862125IPR001005SANT/Myb domain
PfamPF002491.2E-963121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-1665125IPR009057Homeodomain-like
CDDcd001671.96E-667121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MKQVSMEMNK GPWSSDEDSK LIHSISIFGQ GRWDSLAHVA GLKRSCKSCR LRWLNYLRPN  60
LRRGKITPQE QVLILLLHFR FGNRYGNNYF IFFSKIKNRW SKIAENLPGR SYNDVKNYWR  120
TKVQKHAKEL HCEINSQQFR HFLLYQWMPS LLAQQIPTSS SSSSYFELIV TGNYSPNNIN  180
AYLNVNIISS TDSFLREDDS NIWNNLSSFE DGINIPRDFS TPSYMKLHNY SSHDEDDQYY  240
FHNYWTSAEM PSLYEMDHWL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-19112518126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078167.11e-152transcription factor MYB78-like
SwissprotQ10MB43e-56MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2G3C3H62e-98A0A2G3C3H6_CAPCH; Transcription factor
STRINGSolyc06g009410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1539336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.16e-55myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]