PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g056620.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28660.6 Da PI: 8.4354 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.8 | 1.4e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ienk+nrqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gk++eyss Sopim05g056620.0.1 10 KIENKINRQVTFSKRRGGLVKKAHEISVLCDAEVALIVFSQKGKIFEYSS 59 69**********************************************96 PP | |||||||
2 | K-box | 105.6 | 6e-35 | 85 | 176 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e+ +e+++ e++kLk++i+ Lqr+++h++GedL+s+slk+Lq+LeqqL+++lk iRs+Kn+l++e+i+elqkke+++ een++L+kk++ Sopim05g056620.0.1 85 SESPVQENWSLEYTKLKARIDLLQRNHKHYMGEDLDSMSLKDLQNLEQQLDSALKLIRSRKNQLMHESISELQKKERAILEENNMLTKKIK 175 5666789**********************************************************************************98 PP K-box 100 e 100 e Sopim05g056620.0.1 176 E 176 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.819 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-34 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.53E-40 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-30 | 85 | 174 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.443 | 90 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRGKVELRK IENKINRQVT FSKRRGGLVK KAHEISVLCD AEVALIVFSQ KGKIFEYSSD 60 SCMEQILERY ERYSYAERRL LANNSESPVQ ENWSLEYTKL KARIDLLQRN HKHYMGEDLD 120 SMSLKDLQNL EQQLDSALKL IRSRKNQLMH ESISELQKKE RAILEENNML TKKIKEKDKI 180 VEQQGEWHQQ TNQVSTSTSF LLQPHQCLNM GGNYQDEVAE ARRNNELDLN LDSLYPLYNM 240 NKHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF448521 | 0.0 | AF448521.1 Lycopersicon esculentum MADS-box transcription factor MADS-MC (MADS-MC) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234665.1 | 1e-180 | MADS-box transcription factor MADS-MC | ||||
Swissprot | Q6E6S7 | 1e-119 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A2K8GWI8 | 1e-179 | A0A2K8GWI8_9SOLN; MADS-box transcription factor MADS-MC (Fragment) | ||||
TrEMBL | A0A2K8GYM1 | 1e-179 | A0A2K8GYM1_SOLPE; MADS-box transcription factor MADS-MC (Fragment) | ||||
TrEMBL | A0A2K8H169 | 1e-179 | A0A2K8H169_SOLPI; MADS-box transcription factor MADS-MC (Fragment) | ||||
TrEMBL | A0A2K8H3M1 | 1e-179 | A0A2K8H3M1_9SOLN; MADS-box transcription factor MADS-MC (Fragment) | ||||
TrEMBL | A0A2K8H8P0 | 1e-179 | A0A2K8H8P0_9SOLA; MADS-box transcription factor MADS-MC (Fragment) | ||||
TrEMBL | Q8S4L5 | 1e-179 | Q8S4L5_SOLLC; MADS-box transcription factor MADS-MC | ||||
STRING | Solyc05g056620.1.1 | 1e-180 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 5e-91 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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