PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g055240.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 189aa    MW: 21500.8 Da    PI: 5.5758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g055240.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09346344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         WT ++d+l+ ++  +++ +   +W +Ia +++ g+t+ ++  ++
  Sopim05g055240.0.1  3 TWTRDDDKLFEHGLVLYPENsadRWQLIADHVP-GKTADDIMAHY 46
                        7********************************.********999 PP

2Myb_DNA-binding41.62.8e-1397141347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Sopim05g055240.0.1  97 PWTEDEHRLFLIGLDKYGKGDWRSISRNVVVSRTPTQVASHAQKY 141
                         8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129411.497154IPR017930Myb domain
SuperFamilySSF466893.45E-11258IPR009057Homeodomain-like
CDDcd001679.77E-9346No hitNo description
Gene3DG3DSA:1.10.10.605.4E-5348IPR009057Homeodomain-like
PfamPF002497.9E-8347IPR001005SANT/Myb domain
PROSITE profilePS5129421.68490146IPR017930Myb domain
SuperFamilySSF466891.38E-1692146IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1793145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.4E-1194140IPR009057Homeodomain-like
SMARTSM007172.3E-1094144IPR001005SANT/Myb domain
CDDcd001672.89E-997142No hitNo description
PfamPF002494.1E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSTWTRDDDK LFEHGLVLYP ENSADRWQLI ADHVPGKTAD DIMAHYDDLV HDVYEIDSGR  60
IDLPSYTDDP VELEGDCQIT SGSNKKSNEI ERKKGTPWTE DEHRLFLIGL DKYGKGDWRS  120
ISRNVVVSRT PTQVASHAQK YFIRQQAMKK ERKRSSIHDI TTAVDTNPVP PQSSFQNQSG  180
SQNFNFAM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2433390.0AJ243339.1 Lycopersicon esculentum mRNA for I-box binding factor (LeMYBI gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296804.11e-140transcription factor DIVARICATA
RefseqXP_015076073.11e-140transcription factor SRM1-like
SwissprotQ9FNN63e-57SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3Q7HHE11e-139A0A3Q7HHE1_SOLLC; Uncharacterized protein
STRINGSolyc05g055240.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45472241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-72MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]