PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g055240.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 189aa MW: 21500.8 Da PI: 5.5758 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 3 | 46 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT ++d+l+ ++ +++ + +W +Ia +++ g+t+ ++ ++ Sopim05g055240.0.1 3 TWTRDDDKLFEHGLVLYPENsadRWQLIADHVP-GKTADDIMAHY 46 7********************************.********999 PP | |||||||
2 | Myb_DNA-binding | 41.6 | 2.8e-13 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Sopim05g055240.0.1 97 PWTEDEHRLFLIGLDKYGKGDWRSISRNVVVSRTPTQVASHAQKY 141 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.5E-6 | 1 | 52 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.497 | 1 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-11 | 2 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.77E-9 | 3 | 46 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-5 | 3 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-8 | 3 | 47 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.684 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.38E-16 | 92 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-17 | 93 | 145 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.4E-11 | 94 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-10 | 94 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.89E-9 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 4.1E-11 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSTWTRDDDK LFEHGLVLYP ENSADRWQLI ADHVPGKTAD DIMAHYDDLV HDVYEIDSGR 60 IDLPSYTDDP VELEGDCQIT SGSNKKSNEI ERKKGTPWTE DEHRLFLIGL DKYGKGDWRS 120 ISRNVVVSRT PTQVASHAQK YFIRQQAMKK ERKRSSIHDI TTAVDTNPVP PQSSFQNQSG 180 SQNFNFAM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ243339 | 0.0 | AJ243339.1 Lycopersicon esculentum mRNA for I-box binding factor (LeMYBI gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001296804.1 | 1e-140 | transcription factor DIVARICATA | ||||
Refseq | XP_015076073.1 | 1e-140 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 3e-57 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A3Q7HHE1 | 1e-139 | A0A3Q7HHE1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g055240.2.1 | 1e-140 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 4e-72 | MYB family protein |
Publications ? help Back to Top | |||
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