PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g054650.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 153aa MW: 17388 Da PI: 9.4923 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00084 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Sopim05g054650.0.1 27 FECKTCNRQFSSFQALGGHRASH 49 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.03E-8 | 25 | 94 | No hit | No description |
Pfam | PF13912 | 9.6E-13 | 26 | 51 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 27 | 49 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-10 | 71 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.203 | 72 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MANYLMLFSR QENHFNTMVN NSPSRVFECK TCNRQFSSFQ ALGGHRASHK KPRLMGEMNF 60 HLPISPPKPK THECSICGLE FPIGQALGGH MRRHRGMLNE NNNNNNQVPN HDVMKKSSNN 120 PRVLCLDLNL TPLENDLEFK LKKANPIVDC FL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC205681 | 0.0 | AC205681.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0025A19, complete sequence. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239776.1 | 1e-109 | zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 3e-36 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A3Q7GNV7 | 1e-108 | A0A3Q7GNV7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g054650.1.1 | 1e-108 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-38 | C2H2 family protein |