PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g054510.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 299aa MW: 33706.2 Da PI: 9.6556 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.3 | 1.6e-38 | 78 | 138 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt GG+lrnvPvGgg+r+n+k+s Sopim05g054510.0.1 78 PDVALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTIGGTLRNVPVGGGCRRNNKRS 138 56789****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-30 | 62 | 131 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-31 | 81 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.152 | 82 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 84 | 120 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MAFSSIPFYQ DPPNWHHEQG NHHQQQQHLG ITNENSSELS PTVLPPPGAA PGGGGGPVGS 60 TRSGSITERA RLPKITQPDV ALKCPRCEST NTKFCYFNNY NLSQPRHFCK TCRRYWTIGG 120 TLRNVPVGGG CRRNNKRSSS KRSRKSPIRS ERSRNVPIST SNSTNTITTP SHFPPSSTHL 180 SFFNTPFHNF NNFNSTQNCL NFGEIQPHEG DPTFVDQFRH QQMEKFSFFS PLEQPSNLYP 240 IYSEFRINHH DLENVKVEEN KSSTNSTQGM NLQRNNNLGV NQFWTNYNIS STSTSQLL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC186290 | 0.0 | AC186290.2 Solanum lycopersicum chromosome 5 clone C05HBa0131D04, complete sequence. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321378.1 | 0.0 | dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A3Q7GMH2 | 0.0 | A0A3Q7GMH2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g054510.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 6e-37 | DNA binding with one finger 2.4 |