PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g054170.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 334aa    MW: 37053.5 Da    PI: 4.7118
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g054170.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS118.21.1e-3619831810133
                GRAS  10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                         + vs+ d ++ +al++ l++ +s +g+pmqRl ay++e+L+ar+++s+s++yk l+++e +    se +++++++++++P+++f++  aN 
  Sopim05g054170.0.1 198 QKVSDADVTARDALMNVLEQKVSVSGEPMQRLSAYMLEGLKARIYSSGSNIYKMLKCKEPT---GSELISYMQVLYHICPYYRFAYTSANV 285
                         5688899999999***********************************************9...9************************** PP

                GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLa 133
                          I ea+ +e+r+HiiDf+i qG QW+ L+q L 
  Sopim05g054170.0.1 286 VIEEAMRNESRIHIIDFQIAQGSQWVFLMQNLV 318
                         ******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.737144333IPR005202Transcription factor GRAS
PfamPF035143.6E-34198318IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRASQIPQSS GGVHKLCHQP TANFEQYYSP YHVVNNNSSD TSSSGTQLSY QTQNDKFFTL  60
DSLPDAGYVS YDSPPAVSVS SNWSPFSPQC SQSYISDQHH SSDNTYGSPL SGCSVINDGN  120
ELKHVLREMA NNLLGPGFDI DEDSSCSFNG EVSKPSKWNR VLEIAPSLDM KELLLACAEA  180
ISDVEVTARD AQMNVLEQKV SDADVTARDA LMNVLEQKVS VSGEPMQRLS AYMLEGLKAR  240
IYSSGSNIYK MLKCKEPTGS ELISYMQVLY HICPYYRFAY TSANVVIEEA MRNESRIHII  300
DFQIAQGSQW VFLMQNLVLM IPNQLMHAVV DFT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892870.0AC189287.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0166A02, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239819.10.0scarecrow-like protein 13
RefseqXP_004239821.10.0scarecrow-like protein 13
RefseqXP_010321394.10.0scarecrow-like protein 13
RefseqXP_019069407.10.0scarecrow-like protein 13
TrEMBLA0A3Q7GMC00.0A0A3Q7GMC0_SOLLC; Uncharacterized protein
STRINGSolyc05g054170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2813422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.13e-79SCARECROW-like 13