PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim05g054030.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 382aa MW: 43992 Da PI: 8.5223

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim05g054030.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.6	1.2e-06	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ sF r nL+ H r+H Sopim05g054030.0.1 58 YVCEICNLSFQREQNLQMHRRRH 80 9*********************9 PP
2	zf-C2H2	16.5	2.4e-05	142	163	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C+k + +s++k Hi+t+ Sopim05g054030.0.1 142 ICQKCNKGYAVQSDYKAHIKTC 163 7*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.2E-6	57	81	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.9E-5	57	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.78E-7	57	80	No hit	No description
PROSITE profile	PS50157	10.699	58	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	9.9E-4	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.78E-7	136	161	No hit	No description
SMART	SM00355	52	141	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MLTSNSFLFG APSNYSDPFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC 60 EICNLSFQRE QNLQMHRRRH KVPWKLKKKE EEKNEMDQVI KKRVYVCPEP SCVHHDPCHA 120 LGDLVGIKKH FRRKRSNYKQ WICQKCNKGY AVQSDYKAHI KTCGTRGHSC DCGRVFSRVE 180 TFIEHQDSCK PQSTTTKECH DMQIPKPIFL PTTTTHIPPH DQYSKILPNL DLELFTSPNY 240 FNQNTHNFSS FVDQSDHHHH NNNYIVQNND IEVKEIIEEA TTQVTRLKSE ANEILKIAME 300 EKAMAIEKRQ EAKCLIELAN LEMAKAMEIR QSVCASSSSS SHVMKIIKCS SCNNKQFQSV 360 SSSKDATLTN NYYLSSSIYR R*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MLTSNSFLFG APSNYSDPFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC  60
EICNLSFQRE QNLQMHRRRH KVPWKLKKKE EEKNEMDQVI KKRVYVCPEP SCVHHDPCHA  120
LGDLVGIKKH FRRKRSNYKQ WICQKCNKGY AVQSDYKAHI KTCGTRGHSC DCGRVFSRVE  180
TFIEHQDSCK PQSTTTKECH DMQIPKPIFL PTTTTHIPPH DQYSKILPNL DLELFTSPNY  240
FNQNTHNFSS FVDQSDHHHH NNNYIVQNND IEVKEIIEEA TTQVTRLKSE ANEILKIAME  300
EKAMAIEKRQ EAKCLIELAN LEMAKAMEIR QSVCASSSSS SHVMKIIKCS SCNNKQFQSV  360
SSSKDATLTN NYYLSSSIYR R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-16	139	189	5	55	Zinc finger protein JACKDAW
5b3h_F	2e-16	139	189	5	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	0.0	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240203.1	0.0	protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	4e-98	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A3Q7GPS4	0.0	A0A3Q7GPS4_SOLLC; Uncharacterized protein
STRING	Solyc05g054030.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	6e-99	C2H2-like zinc finger protein

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]